Browse Element(s) Details


Os.34424.1.S1_at

Description gb:AK071457.1
DB_XREF= gi:32981480
TID=Os.34424.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503E05.1 (P0503E05.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090J21, full insert sequence.
FL= gb:AK071457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g066002/11Leucine Rich Repeat family protein
LOC_Os03g270541/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06584Os.15553.1.S1_at11/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06584Os.25379.1.A1_at10/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06588Os.53125.1.S1_at10/112+3311243..3313540SNF2 domain-containing protein, putative, expressed
LOC_Os02g06592Os.16806.1.S1_at11/112+3313843..3318382TATA-binding-protein-associated factor 172, putative, expressed
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34424.1.S1_at--253--1111Chr01:14766548..14766572 (25 bp)
AGCTGACCGTAGCAAAGTTTTGGTT
NONE
Os.34424.1.S1_at--138--7871Chr01:14766527..14766551 (25 bp)
GGTTAGTGTAGCGAACTGCAAACAT
NONE
Os.34424.1.S1_at--804--3491Chr01:14766452..14766476 (25 bp)
CATGTCTTCTTAAAACCTTGTGGAA
NONE
Os.34424.1.S1_at--696--6931Chr01:14766240..14766402 (25 bp)
GTAGGTGACAGGTTGCGAGCTCCAA
NONE
Os.34424.1.S1_at--771--4612Chr03:15466573..15466594 (22 bp)
GCGAGCTCCAACAAATTTGGTGCAA
LOC_Os03g27054
Os.34424.1.S1_at--796--8631Chr01:14766192..14766216 (25 bp)
TGGGAACCTGGTATGGAGTGTACAC
NONE
Os.34424.1.S1_at--128--2571Chr01:14766139..14766163 (25 bp)
AACTGATCATGCTTAATTTGCTGAG
NONE
Os.34424.1.S1_at--639--6891Chr01:14766084..14766108 (25 bp)
GTATAGATCTAACGGCTCACGATGA
NONE
Os.34424.1.S1_at--35--3951Chr01:14766072..14766096 (25 bp)
CGGCTCACGATGAAAGGTGCCTTAT
NONE
Os.34424.1.S1_at--635--9814Chr02:3324150..3324174 (25 bp)
TAACAGGGCAATTATGTCTAACAAC
LOC_Os02g06600
Os.34424.1.S1_at--962--7134Chr02:3324165..3324189 (25 bp)
GTCTAACAACGTATGGACGTACCGA
LOC_Os02g06600
Target Sequence 
AGCTGACCGTAGCAAAGTTTTGGTTAGTGTAGCGAACTGCAAACATTAATTTCATTCAGATGAGACATGCAAATTTGATT
GAGAGGAAATGTCTCCCATGTCTTCTTAAAACCTTGTGGAATGGCTAGCTGGTTCTTTTTGTAGGAAGGACAAATCTGAA
ACAAGAAGATGTAGGTGACAGGTTGCGAGCTCCAACAAATTTGGTGCAAAGTTTGTTATGGGAACCTGGTATGGAGTGTA
CACGGGAAAAAGGTATATCAACAGAATGATTAACTGATCATGCTTAATTTGCTGAGACCTTTTACAGTGTTTGCATTTCT
AAAATAGTATAGATCTAACGGCTCACGATGAAAGGTGCCTTATGAAAGGTATCAGAGGTAGAAAGGTACTAAGGATTAAA
AGGTAATTGATAACAGGGCAATTATGTCTAACAACGTATGGACGTACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis