Browse Element(s) Details


OsAffx.24133.2.S1_at

Description tigr:9630.m00595
TID=OsAffx.24133.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0662011/11Leucine Rich Repeat family protein
LOC_Os02g066003/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06588Os.53125.1.S1_at10/112+3311243..3313540SNF2 domain-containing protein, putative, expressed
LOC_Os02g06592Os.16806.1.S1_at11/112+3313843..3318382TATA-binding-protein-associated factor 172, putative, expressed
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24133.2.S1_at--315--6431Chr02:3335261..3335285 (25 bp)
GATCTTTCAAGCAATTCTCTCTCTG
LOC_Os02g06620
OsAffx.24133.2.S1_at--727--7731Chr02:3335285..3335309 (25 bp)
GGTGAGATCCCTTCAGAGTTGACAA
LOC_Os02g06620
OsAffx.24133.2.S1_at--1034--5671Chr02:3335372..3335396 (25 bp)
GACATTGGCCATCTACATGTTGTAG
LOC_Os02g06620
OsAffx.24133.2.S1_at--1140--8792Chr02:3335389..3335413 (25 bp)
TGTTGTAGAGTCTCTTGACCTCTCT
LOC_Os02g06620
OsAffx.24133.2.S1_at--313--8931Chr02:3335404..3335428 (25 bp)
TGACCTCTCTTGCAATAGACTCTTG
LOC_Os02g06620
OsAffx.24133.2.S1_at--324--251Chr02:3335447..3335471 (25 bp)
ATATCAAACTTGACGGGCCTCAGCA
LOC_Os02g06620
OsAffx.24133.2.S1_at--850--4451Chr02:3335463..3335487 (25 bp)
GCCTCAGCAAGCTTAATCTCTCGAA
LOC_Os02g06620
OsAffx.24133.2.S1_at--404--7992Chr02:3335536..3335560 (25 bp)
GGATGACCCATCGATTTATGCCAAC
LOC_Os02g06620
OsAffx.24133.2.S1_at--240--1771Chr02:3335562..3335586 (25 bp)
ACCTGAGGCTTTGTGGATTTCCTTT
LOC_Os02g06620
OsAffx.24133.2.S1_at--1135--5532Chr02:3335660..3335684 (25 bp)
GAAACTCTATGGCTGTACTGCTCAG
LOC_Os02g06620
OsAffx.24133.2.S1_at--233--4931Chr02:3335752..3335776 (25 bp)
GCTTGCTTTCTTCAGTCTCATCGAT
LOC_Os02g06620
Target Sequence 
GATCTTTCAAGCAATTCTCTCTCTGGTGAGATCCCTTCAGAGTTGACAAATCTTAGAGGCCTTCAGTTCTTAAATATGTC
AAGAAATGTTCTATATGGTGGCATCCCAAATGACATTGGCCATCTACATGTTGTAGAGTCTCTTGACCTCTCTTGCAATA
GACTCTTGGGTCCTATTCCTCCTAGCATATCAAACTTGACGGGCCTCAGCAAGCTTAATCTCTCGAACAACCTTCTATCA
GGAGAGATACCTATAGGTAATCAACTCCAAACACTGGATGACCCATCGATTTATGCCAACAACCTGAGGCTTTGTGGATT
TCCTTTGAAAATTCCATGCTCAAACCATTCAAATTCTACGAGTACACTAGAAGGGGCAAAAGAACATCACCAAGAACTGG
AAACTCTATGGCTGTACTGCTCAGTAACTGCAGGAGCTGTCTTTGGTGTTTGGCTGTGGTTTGGAGCACTGTTTTTCTGT
AATGCATGGAGGCTTGCTTTCTTCAGTCTCATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24133.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis