Browse Element(s) Details


Os.7876.1.S1_at

Description gb:AK121223.1
DB_XREF= gi:37990846
TID=Os.7876.1
CNT=106
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090I10, full insert sequence.
FL= gb:AK058907.1 gb:AK121223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0670011/1140S ribosomal protein S14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed
LOC_Os02g06710OsAffx.24138.1.S1_s_at11/112+3362058..3362715expressed protein
LOC_Os02g06720OsAffx.24139.1.S1_at11/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.19805.1.S1_at10/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.23284.1.S1_at9/112+3362819..3369515Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7876.1.S1_at--126--10611Chr02:3359899..3359923 (25 bp)
TTCGCATCCTTCAATGACACTTTCA
LOC_Os02g06700
Os.7876.1.S1_at--281--5631Chr02:3359799..3359908 (25 bp)
GACACTTTCATTCATGTCACTGACT
LOC_Os02g06700
Os.7876.1.S1_at--465--9631Chr02:3359788..3359811 (24 bp)
TCATGTCACTGACTTGTCTGGAAGG
LOC_Os02g06700
Os.7876.1.S1_at--899--8671Chr02:3359774..3359798 (25 bp)
TGTCTGGAAGGGAAACTCTTGTTCG
LOC_Os02g06700
Os.7876.1.S1_at--324--5311Chr02:3359145..3359169 (25 bp)
GAAGGAGGCTGTAGATGTATTGTCA
LOC_Os02g06700
Os.7876.1.S1_at--1131--6271Chr02:3359132..3359156 (25 bp)
GATGTATTGTCAGCCAACTTGTCGC
LOC_Os02g06700
Os.7876.1.S1_at--719--3371Chr02:3359122..3359146 (25 bp)
CAGCCAACTTGTCGCCATGGAGCAT
LOC_Os02g06700
Os.7876.1.S1_at--552--7951Chr02:3359088..3359112 (25 bp)
GGATAGTCTCATAGCTCCCAATGTT
LOC_Os02g06700
Os.7876.1.S1_at--547--3111Chr02:3358981..3359005 (25 bp)
AATTTCCAGTTTTCATGCTTAACAA
LOC_Os02g06700
Os.7876.1.S1_at--261--271Chr02:3358951..3358975 (25 bp)
ATATGTGTACCTTCGTGGTTCCTTA
LOC_Os02g06700
Os.7876.1.S1_at--80--9411Chr02:3358939..3358963 (25 bp)
TCGTGGTTCCTTATAATATGGTTGG
LOC_Os02g06700
Target Sequence 
TTCGCATCCTTCAATGACACTTTCATTCATGTCACTGACTTGTCTGGAAGGGAAACTCTTGTTCGCATTACTGGTGGCAT
GAAGGTCAAAGCTGACCGTGATGAGTCATCACCATATGCAGCTATGCTTGCTTCTCAAGATGTTGCACAGCGTTGCAAGG
AGCTTGGTATTACTGCTCTGCACATCAAGCTTCGTGCCACTGGAGGCAACAAGACAAAGACACCTGGTCCTGGTGCTCAA
TCTGCTCTTAGGGCTCTTGCTCGCTCTGGCATGAAGATTGGTCGCATTGAGGATGTGACCCCGGTTCCCACGGACAGCAC
CCGCAGAAAGGGAGGTAGGAGAGGAAGGAGGCTGTAGATGTATTGTCAGCCAACTTGTCGCCATGGAGCATCTCTTCTTT
GGATAGTCTCATAGCTCCCAATGTTCCTGAAGAGAGATTTAGTTTTGCTCAGTGTCCTGAATTGTTGACTGTCAAGTTAA
TTCGGCTGCTATGTTTTGGTTCAAGGAAATTTCCAGTTTTCATGCTTAACAAACCCNAATATGTGTACCTTCGTGGTTCC
TTATAATATGGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis