Browse Element(s) Details


OsAffx.24135.1.S1_at

Description tigr:9630.m00600
TID=OsAffx.24135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P21-Rho-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0666010/11P21-Rho-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed
LOC_Os02g06710OsAffx.24138.1.S1_s_at11/112+3362058..3362715expressed protein
LOC_Os02g06720OsAffx.24139.1.S1_at11/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.19805.1.S1_at10/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.23284.1.S1_at9/112+3362819..3369515Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000902biological_processcellular morphogenesis
GO:0007204biological_processelevation of cytosolic calcium ion concentration
GO:0009860biological_processpollen tube growth
GO:0010215biological_processcellulose microfibril organization
GO:0030834biological_processregulation of actin filament depolymerization
GO:0031122biological_processcytoplasmic microtubule organization and biogenesis
GO:0050848biological_processregulation of calcium-mediated signaling
GO:0050850biological_processpositive regulation of calcium-mediated signaling
GO:0005737cellular_componentcytoplasm
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0016324cellular_componentapical plasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24135.1.S1_at--141--6471Chr02:3351163..3351246 (25 bp)
GATAATCTCTCAAATGTTCGTGCAT
LOC_Os02g06660
OsAffx.24135.1.S1_at--369--3051Chr02:3351424..3351448 (25 bp)
AATTGGGTACCCTACAGATGTAAAG
LOC_Os02g06660
OsAffx.24135.1.S1_at--9--7551Chr02:3351452..3351476 (25 bp)
GTGGCTCACATAGGTTTGGGCACCA
LOC_Os02g06660
OsAffx.24135.1.S1_at--368--8651Chr02:3351468..3351492 (25 bp)
TGGGCACCAGTGACACATCTCCAAG
LOC_Os02g06660
OsAffx.24135.1.S1_at--192--10431Chr02:3351663..3351687 (25 bp)
TTATCAACCGGTTCTCTGAGCACAA
LOC_Os02g06660
OsAffx.24135.1.S1_at--472--8911Chr02:3351679..3351703 (25 bp)
TGAGCACAACTGCACCATCAAGGCA
LOC_Os02g06660
OsAffx.24135.1.S1_at--607--3651Chr02:3351706..3352128 (25 bp)
CTTCTTGGGCCTCTTTAGATTTTGA
LOC_Os02g06660
OsAffx.24135.1.S1_at--291--611Chr02:3352142..3352166 (25 bp)
ATGCTGCCAATTGAGATCTTGCCGG
LOC_Os02g06660
OsAffx.24135.1.S1_at--1025--1271Chr02:3352155..3352179 (25 bp)
AGATCTTGCCGGAGAAATCTGGCCA
LOC_Os02g06660
OsAffx.24135.1.S1_at--994--5971Chr02:3352166..3352190 (25 bp)
GAGAAATCTGGCCAGGAGGCACCCT
LOC_Os02g06660
OsAffx.24135.1.S1_at--725--6191NONE
GAGGCCCAAGGAAGATTCTTTTAAT
NONE
Target Sequence 
GATAATCTCTCAAATGTTCGTGCATAAGGAGCATGAGATGGAAATTGGGTACCCTACAGATGTAAAGCATGTGGCTCACA
TAGGTTTGGGCACCAGTGACACATCTCCAAGCTGGATGAACGAATTCACGGGAACAGAAGATTTATCAACCGGTTCTCTG
AGCACAACTGCACCATCAAGGCAGACTTCTTGGGCCTCTTTAGATTTTGAACAGCCAAGAAGCATGCTGCCAATTGAGAT
CTTGCCGGAGAAATCTGGCCAGGAGGCACCCTCCTGCCCTGACATCCCAAGAGGCCCAAGGAAGATTCTTTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis