Browse Element(s) Details


Os.19805.1.S1_at

Description gb:AK058629.1
DB_XREF= gi:32968647
TID=Os.19805.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C06, full insert sequence.
FL= gb:AK058629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0672010/11Beige/BEACH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed
LOC_Os02g06710OsAffx.24138.1.S1_s_at11/112+3362058..3362715expressed protein
LOC_Os02g06720OsAffx.24139.1.S1_at11/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.19805.1.S1_at10/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.23284.1.S1_at9/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06730NANA2+3386880..3387275hypothetical protein
LOC_Os02g06740OsAffx.19542.3.S1_x_at7/112+3392271..3397700retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19805.1.S1_at--723--9111Chr02:3364161..3364185 (25 bp)
TGCTGCTACATGTTTTGAGCAACAA
LOC_Os02g06720
Os.19805.1.S1_at--1112--5131NONE
GCAACAAAAGCCCTTCAATCCAGTG
NONE
Os.19805.1.S1_at--165--1671Chr02:3363462..3363486 (25 bp)
AGCCCTTCAATCCAGTGCTTGGAGA
LOC_Os02g06720
Os.19805.1.S1_at--372--7131Chr02:3363413..3363437 (25 bp)
GTCATAAGCTTGGTTTCTCTGGCAT
LOC_Os02g06720
Os.19805.1.S1_at--6--6851Chr02:3363401..3363425 (25 bp)
GTTTCTCTGGCATTTGCCCATTCGG
LOC_Os02g06720
Os.19805.1.S1_at--56--4551Chr02:3363386..3363410 (25 bp)
GCCCATTCGGCAATGTTCATTAGTA
LOC_Os02g06720
Os.19805.1.S1_at--908--2111Chr02:3363357..3363381 (25 bp)
ACAGAAGCCCTCATATCACTGGTGT
LOC_Os02g06720
Os.19805.1.S1_at--185--5811Chr02:3362996..3363020 (25 bp)
GACCGCTAGTTGCTCACGTTAGGGC
LOC_Os02g06720
Os.19805.1.S1_at--962--9891Chr02:3362937..3362961 (25 bp)
TACTAGGTCGGCTGGGTGAGCAAAA
LOC_Os02g06720
Os.19805.1.S1_at--684--8631Chr02:3362925..3362949 (25 bp)
TGGGTGAGCAAAATTCTTTCGCGAT
LOC_Os02g06720
Os.19805.1.S1_at--549--10631Chr02:3362908..3362932 (25 bp)
TTCGCGATAGGTGCGTATTAGATGC
LOC_Os02g06720
Target Sequence 
TGCTGCTACATGTTTTGAGCAACAAAAGCCCTTCAATCCAGTGCTTGGAGAAAGCATGAGAGGATATTTGTTCAAGTCAT
AAGCTTGGTTTCTCTGGCATTTGCCCATTCGGCAATGTTCATTAGTATACTACAGAAGCCCTCATATCACTGGTGTTATC
AGCAGTAAATGTAAGAGAGAACAGTTTGTTACTCTTGTATACCTGTACATACATATCATATGGAGGAGATAGATTCAAAC
AGGAGTGAGAGCTGATGATAATCCACAANTATATGATGCAAACTAGTGGTACAATATNTTTTTCATTTGATTCAGGACAA
AAAACTTAAATACGAATATCCTCACTTCATAGACGCTTCNGATGCATCATAGTTTTGCATTGGTGCTNGACCGCTAGTTG
CTCACGTTAGGGCATTTGAGTGTAACATAATGTNTCTCCGGTGTTGTTACTAGGTCGGCTGGGTGAGCAAAATTCTTTCG
CGATAGGTGCGTATTAGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis