Browse Element(s) Details


OsAffx.24138.1.S1_s_at

Description tigr:9630.m00605
TID=OsAffx.24138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0671011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed
LOC_Os02g06710OsAffx.24138.1.S1_s_at11/112+3362058..3362715expressed protein
LOC_Os02g06720OsAffx.24139.1.S1_at11/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.19805.1.S1_at10/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.23284.1.S1_at9/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06730NANA2+3386880..3387275hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24138.1.S1_s_at--202--9371Chr02:3362243..3362267 (25 bp)
TCGACACGATCGCCGAGGACGACAG
LOC_Os02g06710
OsAffx.24138.1.S1_s_at--217--971Chr02:3362258..3362282 (25 bp)
AGGACGACAGGGAGCTGATGCACCA
LOC_Os02g06710
OsAffx.24138.1.S1_s_at--77--5231Chr02:3362370..3362394 (25 bp)
GTTGGCCTTCGAGCGGCAGCCACCG
LOC_Os02g06710
OsAffx.24138.1.S1_s_at--960--9671Chr02:3362505..3362529 (25 bp)
TCACCGGCGAGCCATCTATTCACAG
LOC_Os02g06710
OsAffx.24138.1.S1_s_at--505--3931Chr02:3362509..3362533 (25 bp)
CGGCGAGCCATCTATTCACAGCAGG
LOC_Os02g06710
OsAffx.24138.1.S1_s_at--18--451Chr02:3362518..3362542 (25 bp)
ATCTATTCACAGCAGGCGCACATAC
LOC_Os02g06710
OsAffx.24138.1.S1_s_at--16--3591Chr02:3362573..3362597 (25 bp)
CATTAACTAGCTAGTCGAGTTTAGT
LOC_Os02g06710
OsAffx.24138.1.S1_s_at--1053--1131Chr02:3362585..3362609 (25 bp)
AGTCGAGTTTAGTACGTTTATCAAG
LOC_Os02g06710
OsAffx.24138.1.S1_s_at--412--4071Chr02:3362588..3362612 (25 bp)
CGAGTTTAGTACGTTTATCAAGATG
LOC_Os02g06710
OsAffx.24138.1.S1_s_at--220--9731Chr02:3362605..3362629 (25 bp)
TCAAGATGAGATGTACCCAAGTACC
LOC_Os02g06710
OsAffx.24138.1.S1_s_at--401--4891Chr02:3362656..3362680 (25 bp)
GCTTAAAACAATTTTGTCTCCTTGA
LOC_Os02g06710
Target Sequence 
TCGACACGATCGCCGAGGACGACAGGGAGCTGATGCACCAGGTGCCCTACGCCGGCGACGGCCACCACCACGGCGTCAAG
AAGCAGGCTGCAGCGACCAGCTCGGCGAGCACCTTCGCCACGCCGACGTTGGCCTTCGAGCGGCAGCCACCGCCGGCGCC
GGCGCCGGCGCCGGCGAGCGGGTTCATGAGGGGGCTCAGCAAGTGGTTCTCCAACAACGGCGTCCACGGCCAGGAGGGGT
GGCCGGAGATCGGCCGCGAAGGTCACCGGCGAGCCATCTATTCACAGCAGGCGCACATACGTGGGCGCGCCACGGGATTG
AATTCAAGTTCATTAACTAGCTAGTCGAGTTTAGTACGTTTATCAAGATGAGATGTACCCAAGTACCCATATGCTTAGTT
ATGATGAATTACGGCTTAAAACAATTTTGTCTCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24138.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis