Browse Element(s) Details


Os.25748.1.S1_x_at

Description gb:AF216530.1
DB_XREF= gi:7141143
TID=Os.25748.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25748 (NCBI UniGene Cluster)
UG_TITLE=Ubiquitin RiP-20 mRNA, partial cds
DEF=Oryza sativa ubiquitin RiP-20 mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g424241/11polyubiquitin OUB2, putative, expressed
LOC_Os02g066401/11polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g467701/11polyubiquitin containing 7 ubiquitin monomers, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42410OsAffx.8589.1.S1_at1/115+24755924..24759716transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g42420NANA5+24776342..24776978hypothetical protein
LOC_Os05g42424Os.8899.1.S1_s_at11/115+24779197..24781553polyubiquitin OUB2, putative, expressed
LOC_Os05g42424Os.8899.1.S1_x_at11/115+24779197..24781553polyubiquitin OUB2, putative, expressed
LOC_Os05g42424Os.8899.1.S1_at11/115+24779197..24781553polyubiquitin OUB2, putative, expressed
LOC_Os05g42424Os.57479.1.S1_x_at2/115+24779197..24781553polyubiquitin OUB2, putative, expressed
LOC_Os05g42424Os.25748.1.S1_x_at1/115+24779197..24781553polyubiquitin OUB2, putative, expressed
LOC_Os05g42428NANA5+24793592..24794439hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25748.1.S1_x_at--316--6011Chr02:3340800..3340824 (25 bp)
GAGAGCTCCGACACCATTGATAATG
LOC_Os02g06640
Os.25748.1.S1_x_at--34--1392Chr06:28403069..28403088 (20 bp)
AGACCAGCAGCGTCTGATCTTCGGT
LOC_Os06g46770
Os.25748.1.S1_x_at--132--1631NONE
AGCTGGAGGATGGACGCAACCTCGC
NONE
Os.25748.1.S1_x_at--381--3071NONE
AATCAGCCAGAGTGGTGGAACTGCC
NONE
Os.25748.1.S1_x_at--241--3911NONE
CTGGTCATGCCGAACCTCTGCTCGT
NONE
Os.25748.1.S1_x_at--874--5431NONE
GAACCTCTGCTCGTCAAGGATTTGT
NONE
Os.25748.1.S1_x_at--1098--7491NONE
GTGGTGCTGATGTCTACGTGTGTCT
NONE
Os.25748.1.S1_x_at--1105--8711NONE
TGTCTGGCTTAATGGACCATCGAAC
NONE
Os.25748.1.S1_x_at--796--8531NONE
TGGACCATCGAACCCGTATGAAATG
NONE
Os.25748.1.S1_x_at--348--811NONE
ATGGTAGTATGATGAAACAGTTTCC
NONE
Os.25748.1.S1_x_at--640--1091NONE
AGTGGATGTGAACCCTTGAGTATTT
NONE
Target Sequence 
GAGAGCTCCGACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAGCAGCGTCTGAT
CTTCGGTGGCAAGCAGCTGGAGGATGGACGCAACCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGC
TCCGCCTCCGTGGTGGTCAGTAATCAGCCAGAGTGGTGGAACTGCCGATGTGCCTGGTCATGCCGAACCTCTGCTCGTCA
AGGATTTGTGGTGCTGATGTCTACGTGTGTCTGGCTTAATGGACCATCGAACCCGTATGAAATGGTAGTATGATGAAACA
GTTTCCTGTGGGACAACAGTANTCCTTATGGATAAAGTGGATGTGAACCCTTGAGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25748.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis