Browse Element(s) Details


Os.8899.1.S1_s_at

Description gb:CA767055
DB_XREF= gi:27549025
DB_XREF=AF53-Rpf_13_N03_T7_008.ab1
CLONE=C0004923
TID=Os.8899.1
CNT=30
FEA=EST
TIER=Stack
STK=9
UG=Os.8899 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein ref:NP_568397.1 (A.thaliana) polyubiquitin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4242411/11polyubiquitin OUB2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42410OsAffx.8589.1.S1_at1/115+24755924..24759716transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g42420NANA5+24776342..24776978hypothetical protein
LOC_Os05g42424Os.8899.1.S1_s_at11/115+24779197..24781553polyubiquitin OUB2, putative, expressed
LOC_Os05g42424Os.8899.1.S1_x_at11/115+24779197..24781553polyubiquitin OUB2, putative, expressed
LOC_Os05g42424Os.8899.1.S1_at11/115+24779197..24781553polyubiquitin OUB2, putative, expressed
LOC_Os05g42424Os.57479.1.S1_x_at2/115+24779197..24781553polyubiquitin OUB2, putative, expressed
LOC_Os05g42424Os.25748.1.S1_x_at1/115+24779197..24781553polyubiquitin OUB2, putative, expressed
LOC_Os05g42428NANA5+24793592..24794439hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8899.1.S1_s_at--352--3891Chr05:24781384..24781408 (25 bp)
CTGTGTCTGCATTATCCTCGTGAAA
LOC_Os05g42424
Os.8899.1.S1_s_at--858--8671Chr05:24781385..24781409 (25 bp)
TGTGTCTGCATTATCCTCGTGAAAA
LOC_Os05g42424
Os.8899.1.S1_s_at--73--3851Chr05:24781390..24781414 (25 bp)
CTGCATTATCCTCGTGAAAACTTTA
LOC_Os05g42424
Os.8899.1.S1_s_at--557--551Chr05:24781397..24781421 (25 bp)
ATCCTCGTGAAAACTTTATTTGTGC
LOC_Os05g42424
Os.8899.1.S1_s_at--776--3671Chr05:24781410..24781434 (25 bp)
CTTTATTTGTGCTGTTAGTGGACCA
LOC_Os05g42424
Os.8899.1.S1_s_at--712--211Chr05:24781414..24781438 (25 bp)
ATTTGTGCTGTTAGTGGACCATCGA
LOC_Os05g42424
Os.8899.1.S1_s_at--1053--8671Chr05:24781417..24781441 (25 bp)
TGTGCTGTTAGTGGACCATCGAGTC
LOC_Os05g42424
Os.8899.1.S1_s_at--157--3551Chr05:24781433..24781457 (25 bp)
CATCGAGTCCGTTTAAATGTGCTGT
LOC_Os05g42424
Os.8899.1.S1_s_at--691--4051Chr05:24781436..24781460 (25 bp)
CGAGTCCGTTTAAATGTGCTGTACT
LOC_Os05g42424
Os.8899.1.S1_s_at--870--7231Chr05:24781439..24781463 (25 bp)
GTCCGTTTAAATGTGCTGTACTGCT
LOC_Os05g42424
Os.8899.1.S1_s_at--890--4231Chr05:24781441..24781465 (25 bp)
CCGTTTAAATGTGCTGTACTGCTGT
LOC_Os05g42424
Target Sequence 
CTGTGTCTGCATTATCCTCGTGAAAACTTTATTTGTGCTGTTAGTGGACCATCGAGTCCGTTTAAATGTGCTGTACTGCT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8899.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis