Browse Element(s) Details


Os.22660.2.S1_x_at

Description gb:AK067024.1
DB_XREF= gi:32977042
TID=Os.22660.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22660 (NCBI UniGene Cluster)
UG_TITLE=Ubiquitin mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091J24, full insert sequence.
FL= gb:AK067024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g066404/11polyubiquitin containing 7 ubiquitin monomers, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06592Os.16806.1.S1_at11/112+3313843..3318382TATA-binding-protein-associated factor 172, putative, expressed
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed
LOC_Os02g06710OsAffx.24138.1.S1_s_at11/112+3362058..3362715expressed protein
LOC_Os02g06720OsAffx.24139.1.S1_at11/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.19805.1.S1_at10/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.23284.1.S1_at9/112+3362819..3369515Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22660.2.S1_x_at--775--971Chr02:3341348..3341372 (25 bp)
AGGAGTCAACGCTTCACCTTGTCCT
LOC_Os02g06640
Os.22660.2.S1_x_at--315--931Chr02:3341311..3341335 (25 bp)
AGGCATGCAAATCTTCGTGAAGACT
LOC_Os02g06640
Os.22660.2.S1_x_at--419--3791Chr02:3341265..3341289 (25 bp)
CTCGAGGTGGAGTCTTCTGATACCA
LOC_Os02g06640
Os.22660.2.S1_x_at--792--8031Chr02:3341257..3341281 (25 bp)
GGAGTCTTCTGATACCATCGACAAT
LOC_Os02g06640
Os.22660.2.S1_x_at--719--3451NONE
CAGTCAGTTTGGTGGAGTTGTCGAT
NONE
Os.22660.2.S1_x_at--962--6051NONE
GAGTTGTCGATGTGTCTGGTTGTCT
NONE
Os.22660.2.S1_x_at--435--791NONE
ATGTGTCTGGTTGTCTTCGAGTCTC
NONE
Os.22660.2.S1_x_at--1142--10811NONE
TTGTCTTCGAGTCTCTGTTCGTTAA
NONE
Os.22660.2.S1_x_at--514--9371NONE
TCGAGTCTCTGTTCGTTAAGTATTT
NONE
Os.22660.2.S1_x_at--335--6891NONE
GTATTTGTGGTGCTGATGTCTATTT
NONE
Os.22660.2.S1_x_at--144--10671NONE
TTCCTGTGGGATAGTAGTATGTTTT
NONE
Target Sequence 
AGGAGTCAACGCTTCACCTTGTCCTCCGTCTCAGGGGAGGCATGCAAATCTTCGTGAAGACTCTGACCGGCAAGACCATC
ACCCTCGAGGTGGAGTCTTCTGATACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA
GCAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCTGACTACAACATCCAGAAGGAGTCNNNNC
TCCACNTNGTGNTTCGTCTCTGTGGTGGTCAGTAATCAGTCAGTTTGGTGGAGTTGTCGATGTGTCTGGTTGTCTTCGAG
TCTCTGTTCGTTAAGTATTTGTGGTGCTGATGTCTATTTGTGTTTGGTTTAATGGTTTATTGAGTTTGTATGATATGTTA
GTTTTATGAAACAGTTTCCTGTGGGATAGTAGTATGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22660.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis