Browse Element(s) Details


OsAffx.24136.1.S1_at

Description tigr:9630.m00601
TID=OsAffx.24136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0667011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed
LOC_Os02g06710OsAffx.24138.1.S1_s_at11/112+3362058..3362715expressed protein
LOC_Os02g06720OsAffx.24139.1.S1_at11/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.19805.1.S1_at10/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.23284.1.S1_at9/112+3362819..3369515Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24136.1.S1_at--759--3611Chr02:3353695..3353719 (25 bp)
CTTGGGCTTGCCTGCTTTGCTCTTG
LOC_Os02g06670
OsAffx.24136.1.S1_at--96--3851Chr02:3353706..3353730 (25 bp)
CTGCTTTGCTCTTGTGGTTGCCATG
LOC_Os02g06670
OsAffx.24136.1.S1_at--921--3611Chr02:3353716..3353740 (25 bp)
CTTGTGGTTGCCATGGCTGGAGCTA
LOC_Os02g06670
OsAffx.24136.1.S1_at--408--5911Chr02:3353735..3353759 (25 bp)
GAGCTACTCAGCTCAAGGTCGGCGG
LOC_Os02g06670
OsAffx.24136.1.S1_at--607--4211Chr02:3353783..3353807 (25 bp)
CCGCCAATGCGGAGTCGTACAACGA
LOC_Os02g06670
OsAffx.24136.1.S1_at--96--11Chr02:3353795..3353819 (25 bp)
AGTCGTACAACGATTGGGCCGAGAA
LOC_Os02g06670
OsAffx.24136.1.S1_at--1011--6151Chr02:3353823..3353847 (25 bp)
GAGGTTCCAGATCGGAGACACCCTA
LOC_Os02g06670
OsAffx.24136.1.S1_at--773--5971Chr02:3353837..3353861 (25 bp)
GAGACACCCTAGGTAATCAATTGAT
LOC_Os02g06670
OsAffx.24136.1.S1_at--1160--6551Chr02:3353859..3353883 (25 bp)
GATTAAATTCGAGTTCTTTGCGACA
LOC_Os02g06670
OsAffx.24136.1.S1_at--339--10711Chr02:3353876..3353900 (25 bp)
TTGCGACAAATATTATTCCATGCAT
LOC_Os02g06670
OsAffx.24136.1.S1_at--1119--10671Chr02:3353891..3353915 (25 bp)
TTCCATGCATTTGTGATGAAGCTTT
LOC_Os02g06670
Target Sequence 
CTTGGGCTTGCCTGCTTTGCTCTTGTGGTTGCCATGGCTGGAGCTACTCAGCTCAAGGTCGGCGGCGGCAATGGCTGGAG
CGTCCCGGCCGCCAATGCGGAGTCGTACAACGATTGGGCCGAGAAGATGAGGTTCCAGATCGGAGACACCCTAGGTAATC
AATTGATTAAATTCGAGTTCTTTGCGACAAATATTATTCCATGCATTTGTGATGAAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis