Browse Element(s) Details


Os.16806.1.S1_at

Description gb:AK058838.1
DB_XREF= gi:32968856
TID=Os.16806.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-D06, full insert sequence.
FL= gb:AK058838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0659211/11TATA-binding-protein-associated factor 172, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06580Os.53389.1.S1_at11/112+3291233..3295424Formin Homology 2 Domain containing protein, expressed
LOC_Os02g06584Os.15553.1.S1_at11/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06584Os.25379.1.A1_at10/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06588Os.53125.1.S1_at10/112+3311243..3313540SNF2 domain-containing protein, putative, expressed
LOC_Os02g06592Os.16806.1.S1_at11/112+3313843..3318382TATA-binding-protein-associated factor 172, putative, expressed
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16806.1.S1_at--522--3851Chr02:3317696..3317720 (25 bp)
CTGAGAACGCCAGCCTGAAGACAAT
LOC_Os02g06592
Os.16806.1.S1_at--836--8971Chr02:3317720..3317744 (25 bp)
TGAACACTGACCAACTGCTTGATCT
LOC_Os02g06592
Os.16806.1.S1_at--539--9071Chr02:3317735..3317759 (25 bp)
TGCTTGATCTGTTTGCTTCGACGCC
LOC_Os02g06592
Os.16806.1.S1_at--452--1411Chr02:3317767..3317888 (25 bp)
AGAAAAGCGTCTGTACTCCCAAGCA
LOC_Os02g06592
Os.16806.1.S1_at--191--2971Chr02:3317957..3317981 (25 bp)
AATGGTCTGGACGAGCTATGGGATC
LOC_Os02g06592
Os.16806.1.S1_at--962--3691Chr02:3317972..3317996 (25 bp)
CTATGGGATCAGTCTCAGTATGCAG
LOC_Os02g06592
Os.16806.1.S1_at--356--6091Chr02:3317999..3318023 (25 bp)
GAGTACGATCTCAACCAGTTCTTGG
LOC_Os02g06592
Os.16806.1.S1_at--317--3251Chr02:3318010..3318034 (25 bp)
CAACCAGTTCTTGGCGAAGCTCAAC
LOC_Os02g06592
Os.16806.1.S1_at--56--5411Chr02:3318025..3318049 (25 bp)
GAAGCTCAACGGCTGAACACACGAT
LOC_Os02g06592
Os.16806.1.S1_at--758--911Chr02:3318336..3318360 (25 bp)
AGGCTGCAGCTCCTTGTAAATTTTG
LOC_Os02g06592
Os.16806.1.S1_at--905--10691Chr02:3318358..3318382 (25 bp)
TTGCCTTGAGTTGCTTACTGTTTCT
LOC_Os02g06592
Target Sequence 
CTGAGAACGCCAGCCTGAAGACAATGAACACTGACCAACTGCTTGATCTGTTTGCTTCGACGCCTGCTTCCAGAAAAGCG
TCTGTACTCCCAAGCAGTTCGGGTGGTGATCAGAGTAAAGATTCCAAGGGGAAATCTGGTGGGAAGGGTTTGAAGTCCAT
TCTGAATGGTCTGGACGAGCTATGGGATCAGTCTCAGTATGCAGACGAGTACGATCTCAACCAGTTCTTGGCGAAGCTCA
ACGGCTGAACACACGATCNCCGGTCCTGTACAGTGTAAAGCGAATTGGGGCGTGTGATGAACAGGTTGGCAGATTTTGTT
GGCAACNCNCAGGAGTCAGAAATTTTTTTGTTGTTTCATACGGAAGAAGGGAAAAAAAAAGGAAGATCGCAAGATCTAGA
GCAATGTGGCTAACATATAGGTGCTTGAGATGGTGATCTCAAATTTTTGTCTTTTGAGCTTTTGGTTAGGAGGGTTTAGA
GAGAGATAGAGCTAGTCTTGAGAGGAGTTGTATATACTATCTGCTCATTATAATAATTAATCAAAGGCTGCAGCTCCTTG
TAAATTTTGCCTTGAGTTGCTTACTGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis