Browse Element(s) Details


Os.25379.1.A1_at

Description gb:CA760893
DB_XREF= gi:25804932
DB_XREF=BR060008B10G06.ab1
CLONE=BR060008B10G06.ab1
TID=Os.25379.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25379 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0658410/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06560NANA2+3279685..3279951expressed protein
LOC_Os02g06570Os.27081.1.A1_at11/112+3283260..3286364CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os02g06580Os.53389.1.S1_at11/112+3291233..3295424Formin Homology 2 Domain containing protein, expressed
LOC_Os02g06584Os.15553.1.S1_at11/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06584Os.25379.1.A1_at10/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06588Os.53125.1.S1_at10/112+3311243..3313540SNF2 domain-containing protein, putative, expressed
LOC_Os02g06592Os.16806.1.S1_at11/112+3313843..3318382TATA-binding-protein-associated factor 172, putative, expressed
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25379.1.A1_at--844--5471Chr02:3303914..3303938 (25 bp)
GAACATTTCATGGTCATCTGGCTAG
LOC_Os02g06584
Os.25379.1.A1_at--453--491Chr02:3303929..3303953 (25 bp)
ATCTGGCTAGTCGAGCTGAGCGTGT
LOC_Os02g06584
Os.25379.1.A1_at--1053--3151Chr02:3303984..3304008 (25 bp)
AATTCCTGATGCCTTTGTACAGCCT
LOC_Os02g06584
Os.25379.1.A1_at--728--2431Chr02:3304022..3304046 (25 bp)
AAAAGCTAGGGTTTGCTGCTGGCCT
LOC_Os02g06584
Os.25379.1.A1_at--83--5891Chr02:3304056..3304080 (25 bp)
GAGCGGGCATGAGCGCCAGCTTTCT
LOC_Os02g06584
Os.25379.1.A1_at--1156--10291NONE
TTTCTCCCTCTCTGTTAAGGGTGTA
NONE
Os.25379.1.A1_at--1051--3271Chr02:3304134..3304158 (25 bp)
CAAAATCTTCTCATGGCTGGTCGTC
LOC_Os02g06584
Os.25379.1.A1_at--1077--411Chr02:3304209..3304233 (25 bp)
ATCATCAGCTCTATCGTCAATTCGT
LOC_Os02g06584
Os.25379.1.A1_at--310--3131Chr02:3304227..3304251 (25 bp)
AATTCGTCTCCTGTGTTTCGGCCTG
LOC_Os02g06584
Os.25379.1.A1_at--470--10491Chr02:3304243..3304267 (25 bp)
TTCGGCCTGGCCAGATTAACCTAAG
LOC_Os02g06584
Os.25379.1.A1_at--1090--51Chr02:3304300..3304324 (25 bp)
ATTGACCCAAGCCAGAAATAGCAGT
LOC_Os02g06584
Target Sequence 
GAACATTTCATGGTCATCTGGCTAGTCGAGCTGAGCGTGTAAACTGGGTAAAGCAAGNTATCCTGAATTGAATTCCTGAT
GCCTTTGTACAGCCTCCCCAAGACCCGAAAAAGCTAGGGTTTGCTGCTGGCCTGGTGCTGCGGAGCGGGCATGAGCGCCA
GCTTTCTCCCTCTCTGTTAAGGGTGTAATAAGGGGTTAATTTGTGAACCCGCTTATAAATCAAAATCTTCTCATGGCTGG
TCGTCCTCGCTCTCCTGTCGTCGGCTTCTCCTCCATCGCCGATGATCATCACTCTATCATCAGCTCTATCGTCAATTCGT
CTCCTGTGTTTCGGCCTGGCCAGATTAACCTAAGCAGAAAGAGCAGTAGTTTTATCAGTTGGTTATATTGACCCAAGCCA
GAAATAGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25379.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis