Browse Element(s) Details


Os.53389.1.S1_at

Description gb:AK072377.1
DB_XREF= gi:32982400
TID=Os.53389.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023067F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067F04, full insert sequence.
FL= gb:AK072377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0658011/11Formin Homology 2 Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06540Os.50048.1.S1_at11/112+3266009..3268698Sugar carrier protein C, putative, expressed
LOC_Os02g06550NANA2+3270601..3271272retrotransposon, putative, centromere-specific
LOC_Os02g06560NANA2+3279685..3279951expressed protein
LOC_Os02g06570Os.27081.1.A1_at11/112+3283260..3286364CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os02g06580Os.53389.1.S1_at11/112+3291233..3295424Formin Homology 2 Domain containing protein, expressed
LOC_Os02g06584Os.15553.1.S1_at11/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06584Os.25379.1.A1_at10/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06588Os.53125.1.S1_at10/112+3311243..3313540SNF2 domain-containing protein, putative, expressed
LOC_Os02g06592Os.16806.1.S1_at11/112+3313843..3318382TATA-binding-protein-associated factor 172, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0030041biological_processactin filament polymerization
GO:0045010biological_processactin nucleation
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009524cellular_componentphragmoplast
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53389.1.S1_at--149--8511Chr02:3294881..3294905 (25 bp)
TGGCAAATCTGCGACACGAATTATT
LOC_Os02g06580
Os.53389.1.S1_at--658--5471Chr02:3294924..3294948 (25 bp)
GAACTCCGACATGGCATCGCTAGAA
LOC_Os02g06580
Os.53389.1.S1_at--794--9211Chr02:3294962..3294986 (25 bp)
TCCACCGCTCGTTAGAAAGTTTCAT
LOC_Os02g06580
Os.53389.1.S1_at--571--5991Chr02:3294997..3295021 (25 bp)
GAGACTGAGACCAATTTTCTCCTGA
LOC_Os02g06580
Os.53389.1.S1_at--427--5451Chr02:3295055..3295079 (25 bp)
GAACGATTCGATATTTCCATGGAAA
LOC_Os02g06580
Os.53389.1.S1_at--668--2331Chr02:3295087..3295111 (25 bp)
AAAGATGACGGTTTTCGCCTGTTCG
LOC_Os02g06580
Os.53389.1.S1_at--482--10651Chr02:3295100..3295124 (25 bp)
TTCGCCTGTTCGTCATTGTAAGAGA
LOC_Os02g06580
Os.53389.1.S1_at--922--651Chr02:3295149..3295173 (25 bp)
ATGCAAGGAGGTTGGTGCTTCACAA
LOC_Os02g06580
Os.53389.1.S1_at--891--411Chr02:3295221..3295245 (25 bp)
ATCATCCCAGTCAAATCCTCAGGAG
LOC_Os02g06580
Os.53389.1.S1_at--290--10291Chr02:3295360..3295384 (25 bp)
TTTCGCCCGAGACCATGTAAAAAGT
LOC_Os02g06580
Os.53389.1.S1_at--292--2411Chr02:3295378..3295402 (25 bp)
AAAAAGTCCCATTTGCAGAGGCATT
LOC_Os02g06580
Target Sequence 
TGGCAAATCTGCGACACGAATTATTGAGAGCCAAAGAATTCCTGAACTCCGACATGGCATCGCTAGAAGAGAACAGTGGA
TTCCACCGCTCGTTAGAAAGTTTCATAGAACATGCAGAGACTGAGACCAATTTTCTCCTGAAAGAAGACAAGAGATTGAG
GATGTTAGTGAAGAGAACGATTCGATATTTCCATGGAAATGATGAGAAAGATGACGGTTTTCGCCTGTTCGTCATTGTAA
GAGATTTTCTGGTGATGCTAGATAAGGCATGCAAGGAGGTTGGTGCTTCACAAAAGAAGGCAACAAATAAATCTCAAGCC
AATGGCAACTCTAATAACCCATCATCCCAGTCAAATCCTCAGGAGCAACAGTTTCCTGCTGTTTTGGATCATCATTTTGA
TAGCTCAGACTCTAATGATTGAAGATAGATACAATCTTAGATACTAAGATACATACATTATGTTAGATATTTTATATTTT
TTCGCCCGAGACCATGTAAAAAGTCCCATTTGCAGAGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis