Browse Element(s) Details


Os.50048.1.S1_at

Description gb:AK070615.1
DB_XREF= gi:32980639
TID=Os.50048.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063D11, full insert sequence.
FL= gb:AK070615.1 gb:AK119771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0654011/11Sugar carrier protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed
LOC_Os02g06510OsAffx.11918.1.S1_s_at11/112+3251639..3252390myosin heavy chain, putative, expressed
LOC_Os02g06520Os.18079.1.S1_at11/112+3254923..3256937F-box domain containing protein, expressed
LOC_Os02g06530OsAffx.11919.1.S1_s_at11/112+3263666..3265602Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os02g06540Os.50048.1.S1_at11/112+3266009..3268698Sugar carrier protein C, putative, expressed
LOC_Os02g06550NANA2+3270601..3271272retrotransposon, putative, centromere-specific
LOC_Os02g06560NANA2+3279685..3279951expressed protein
LOC_Os02g06570Os.27081.1.A1_at11/112+3283260..3286364CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os02g06580Os.53389.1.S1_at11/112+3291233..3295424Formin Homology 2 Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50048.1.S1_at--994--5851Chr02:3268204..3268228 (25 bp)
GACCAAGTGCGTGCCGCTCGAAGAG
LOC_Os02g06540
Os.50048.1.S1_at--481--2791Chr02:3268310..3268334 (25 bp)
AAGAGGATAGCCCTAGAGATGAGCT
LOC_Os02g06540
Os.50048.1.S1_at--591--6711Chr02:3268338..3268362 (25 bp)
GTTCTCTACTAATATACTGACGTGC
LOC_Os02g06540
Os.50048.1.S1_at--886--3931Chr02:3268358..3268382 (25 bp)
CGTGCAAAGCTTTTACGCGTTCGCG
LOC_Os02g06540
Os.50048.1.S1_at--190--6431Chr02:3268434..3268458 (25 bp)
GATCTATCATTTCAGTTAAGCTAAT
LOC_Os02g06540
Os.50048.1.S1_at--927--5231Chr02:3268485..3268509 (25 bp)
GAATACACATACTCTCTTCATCAAA
LOC_Os02g06540
Os.50048.1.S1_at--601--2991Chr02:3268546..3268570 (25 bp)
AATGAATTTGGACAGGCGGCCTATC
LOC_Os02g06540
Os.50048.1.S1_at--854--5651Chr02:3268556..3268580 (25 bp)
GACAGGCGGCCTATCTAGATTATGT
LOC_Os02g06540
Os.50048.1.S1_at--57--6251Chr02:3268614..3268638 (25 bp)
GATGGAGTACTTTTCATAGCTAGGG
LOC_Os02g06540
Os.50048.1.S1_at--1114--9031Chr02:3268640..3268664 (25 bp)
TGCAGCATGGGTTCACTCATTGATT
LOC_Os02g06540
Os.50048.1.S1_at--873--3131Chr02:3268672..3268696 (25 bp)
AATTAAACTTGTTGCCGATTCTGAT
LOC_Os02g06540
Target Sequence 
GACCAAGTGCGTGCCGCTCGAAGAGGTGGCGCACGTCTGGAGGAAGCACTGGTTCTGGCGCAAGTTCATCGTCGACTCCC
CCGACCGCGGCGGCGCCGAGATGAGGAAGAGGATAGCCCTAGAGATGAGCTAGAGTTCTCTACTAATATACTGACGTGCA
AAGCTTTTACGCGTTCGCGAAAAAGAGAAGAGAATAAAAGCTTAGCTAACATGAACAATGTTGATTGATTGATCTATCAT
TTCAGTTAAGCTAATTGATTAATTGCCTGATTATGATAGAAGAATACACATACTCTCTTCATCAAAAAGCTCATCATAGT
ATTTGGATAGGACATAATCTATAATGAATTTGGACAGGCGGCCTATCTAGATTATGTTGTATCTAGATACTAGGTTGGGT
TTTTTTTACAGATGGAGTACTTTTCATAGCTAGGGGTGCAGCATGGGTTCACTCATTGATTAGTTGGTAATTAAACTTGT
TGCCGATTCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis