Browse Element(s) Details


OsAffx.11918.1.S1_s_at

Description tigr:9630.m00581
TID=OsAffx.11918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0651011/11myosin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06470Os.8872.2.S1_at11/112+3227679..3229222F-box domain containing protein, expressed
LOC_Os02g06490OsAffx.24131.1.S1_at10/112+3234378..3237519Vacuolar protein sorting-associated protein VPS4, putative
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed
LOC_Os02g06510OsAffx.11918.1.S1_s_at11/112+3251639..3252390myosin heavy chain, putative, expressed
LOC_Os02g06520Os.18079.1.S1_at11/112+3254923..3256937F-box domain containing protein, expressed
LOC_Os02g06530OsAffx.11919.1.S1_s_at11/112+3263666..3265602Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os02g06540Os.50048.1.S1_at11/112+3266009..3268698Sugar carrier protein C, putative, expressed
LOC_Os02g06550NANA2+3270601..3271272retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11918.1.S1_s_at--550--9971Chr02:3251759..3251783 (25 bp)
TACCATGTTAGGTGGCTGCAACACG
LOC_Os02g06510
OsAffx.11918.1.S1_s_at--308--5151Chr02:3251776..3251800 (25 bp)
GCAACACGAGATTAGGCTCAGCTCT
LOC_Os02g06510
OsAffx.11918.1.S1_s_at--529--711Chr02:3251825..3251965 (25 bp)
ATGATTTCTCTACAGGTGGCTCAAG
LOC_Os02g06510
OsAffx.11918.1.S1_s_at--735--6791Chr02:3251994..3252018 (25 bp)
GTTATCACTATATGACCGCCAAGAA
LOC_Os02g06510
OsAffx.11918.1.S1_s_at--357--4851Chr02:3252016..3252040 (25 bp)
GAATCCTCGGAATCCTACGTGAAGA
LOC_Os02g06510
OsAffx.11918.1.S1_s_at--420--2511Chr02:3252051..3252075 (25 bp)
AACATCGGCGAGGTTGGCGCACAGC
LOC_Os02g06510
OsAffx.11918.1.S1_s_at--522--151Chr02:3252083..3252107 (25 bp)
ATTATGCGGGCATTGCTCGTGGTAC
LOC_Os02g06510
OsAffx.11918.1.S1_s_at--589--3331Chr02:3252111..3252135 (25 bp)
CACGGAGTTCCGACAACAGAGCCAA
LOC_Os02g06510
OsAffx.11918.1.S1_s_at--593--2471Chr02:3252125..3252149 (25 bp)
AACAGAGCCAAGCACTCGTGGAGTC
LOC_Os02g06510
OsAffx.11918.1.S1_s_at--655--991Chr02:3252236..3252260 (25 bp)
AGGATTACAAAGCTCGACTACGGAA
LOC_Os02g06510
OsAffx.11918.1.S1_s_at--1030--4331Chr02:3252263..3252287 (25 bp)
CCATGGCCGCTGAGCTAGATTTAGA
LOC_Os02g06510
Target Sequence 
TACCATGTTAGGTGGCTGCAACACGAGATTAGGCTCAGCTCTCTCAAGGAAACCATTGATGAACAAATGATTTCTCTACA
GGTGGCTCAAGAATGTGTAGAAAAGAGATCACGTGAAATGTTATCACTATATGACCGCCAAGAATCCTCGGAATCCTACG
TGAAGATGTCTAAGGAAACATCGGCGAGGTTGGCGCACAGCTCTCGCCATTATGCGGGCATTGCTCGTGGTACATGCACG
GAGTTCCGACAACAGAGCCAAGCACTCGTGGAGTCAAGGGAGCCATGGCAGCCAAGCACTCAAGGTGGGAATTCCATTGA
TGACCTCGAGAAGCTCAAGTCAAATTTTTGCATGTGGAAGAAGGATTACAAAGCTCGACTACGGAAAGCCATGGCCGCTG
AGCTAGATTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11918.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis