Browse Element(s) Details


OsAffx.24131.1.S1_at

Description tigr:9630.m00579
TID=OsAffx.24131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MIT domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0649010/11Vacuolar protein sorting-associated protein VPS4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein
LOC_Os02g06440OsAffx.11917.1.S1_x_at9/112+3216940..3217809hypothetical protein
LOC_Os02g06440OsAffx.11917.1.S1_at8/112+3216940..3217809hypothetical protein
LOC_Os02g06450OsAffx.2521.1.S1_at11/112+3219169..3219516hypothetical protein
LOC_Os02g06460Os.49520.1.A1_at5/112+3220489..3225189hypothetical protein
LOC_Os02g06460Os.8872.1.S1_at1/112+3220489..3225189hypothetical protein
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06470Os.8872.2.S1_at11/112+3227679..3229222F-box domain containing protein, expressed
LOC_Os02g06490OsAffx.24131.1.S1_at10/112+3234378..3237519Vacuolar protein sorting-associated protein VPS4, putative
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed
LOC_Os02g06510OsAffx.11918.1.S1_s_at11/112+3251639..3252390myosin heavy chain, putative, expressed
LOC_Os02g06520Os.18079.1.S1_at11/112+3254923..3256937F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009825biological_processmultidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0019538biological_processprotein metabolism
GO:0008352cellular_componentkatanin
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24131.1.S1_at--277--2751Chr02:3235894..3235918 (25 bp)
AAGACAGAATTCCTCGTGCAGATGC
LOC_Os02g06490
OsAffx.24131.1.S1_at--588--6291Chr02:3236134..3236158 (25 bp)
GATGATAAAGTCCTTGTTCTTGCTG
LOC_Os02g06490
OsAffx.24131.1.S1_at--704--10131Chr02:3236173..3236308 (25 bp)
TATGCTCTGGATCAGGCTGTACGGC
LOC_Os02g06490
OsAffx.24131.1.S1_at--981--4831Chr02:3236337..3236361 (25 bp)
GCTACCCGACCTTAAAGCTAGGCAG
LOC_Os02g06490
OsAffx.24131.1.S1_at--293--4871Chr02:3236353..3236375 (23 bp)
GCTAGGCAGCACATGTTCAAGGTCC
LOC_Os02g06490
OsAffx.24131.1.S1_at--923--6731Chr02:3236367..3236501 (25 bp)
GTTCAAGGTCCATCTGGGTGACACC
LOC_Os02g06490
OsAffx.24131.1.S1_at--561--9651Chr02:3236512..3236536 (25 bp)
TCACCAAGGGCGACTTCGAGAGCTT
LOC_Os02g06490
OsAffx.24131.1.S1_at--1044--531Chr02:3236571..3236706 (25 bp)
ATCGCCGTCTGCGTGAAGGACGTGT
LOC_Os02g06490
OsAffx.24131.1.S1_at--595--1911Chr02:3236701..3236725 (25 bp)
ACGTGTTGTTCGAGCCGGTGCGCAA
LOC_Os02g06490
OsAffx.24131.1.S1_at--178--2311NONE
AAAGGCCTGGCTGCTCAGATCACGC
NONE
OsAffx.24131.1.S1_at--446--9671Chr02:3237410..3237434 (25 bp)
TCACGAGGACGGACTTGGACAAGGT
LOC_Os02g06490
Target Sequence 
AAGACAGAATTCCTCGTGCAGATGCAGGGTGTTGGACATAACGATGATAAAGTCCTTGTTCTTGCTGCCACAAACACTCC
ATATGCTCTGGATCAGGCTGTACGGCGGCGTTTTGACAAACGTATCTACATTCCGCTACCCGACCTTAAAGCTAGGCAGC
ACATGTTCAAGGTCCATCTGGGTGACACCCCTCACAGCCTCACCAAGGGCGACTTCGAGAGCTTGGCTCGCCGGACCGAC
GGCTTCTCCGGCTCCGACATCGCCGTCTGCGTGAAGGACGTGTTGTTCGAGCCGGTGCGCAAGACGCAGGATGCCATGTT
CTTCTTCGGGACGGCGGAGGGCGACGGCGACGGCGGCGCGTGGACGCCGTGTGGGCCGACGCGGCCGGGCGCCGTGCAGA
TCACCATGCAGGAGCTCGCGGCCAAAGGCCTGGCTGCTCAGATCACGCCGCCGCCGATCACGAGGACGGACTTGGACAAG
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis