Browse Element(s) Details


Os.7064.1.S1_s_at

Description gb:AU162361
DB_XREF= gi:11025760
DB_XREF=AU162361
CLONE=E61629
TID=Os.7064.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7064 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T47628 (A.thaliana) T47628 sugar-phosphate isomerase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0636011/11KpsF/GutQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06310Os.45422.1.S1_x_at2/112+3154192..3157440hypothetical protein
LOC_Os02g06320OsAffx.24127.1.S1_at10/112+3158637..3160600RNA recognition motif 2 family protein
LOC_Os02g06330OsAffx.24128.1.S1_s_at11/112+3163942..3165032AP2 domain containing protein, expressed
LOC_Os02g06340Os.24778.1.S1_at11/112+3166615..3170814EH-domain containing protein 1, putative, expressed
LOC_Os02g06350OsAffx.18139.2.S1_at10/112+3171932..3174989hypothetical protein
LOC_Os02g06350Os.55379.1.S1_x_at1/112+3171932..3174989hypothetical protein
LOC_Os02g06360Os.7064.1.S1_s_at11/112+3179627..3182762KpsF/GutQ family protein, expressed
LOC_Os02g06370Os.32450.1.S1_at10/112+3182870..3187022DNA-binding protein, putative, expressed
LOC_Os02g06380OsAffx.24129.1.S1_at10/112+3188102..3190109uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os02g06390Os.5009.1.S1_at10/112+3191320..3194131expressed protein
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7064.1.S1_s_at--763--7951Chr02:3180995..3181019 (25 bp)
GGATCAACTCACTGAACTCACTAGT
LOC_Os02g06360
Os.7064.1.S1_s_at--981--451Chr02:3181087..3181111 (25 bp)
ATCTCCGGCGTACACTCAAGGCAAG
LOC_Os02g06360
Os.7064.1.S1_s_at--12--3091Chr02:3182350..3182374 (25 bp)
CAATCACCGCTGATGCAATGGCAGT
LOC_Os02g06360
Os.7064.1.S1_s_at--521--3971Chr02:3182410..3182434 (25 bp)
CGGTGCAGTTCTTGCCAGTTGTTGA
LOC_Os02g06360
Os.7064.1.S1_s_at--1139--2451Chr02:3182439..3182463 (25 bp)
AACAACGTTGTCTGTGGGATCATCA
LOC_Os02g06360
Os.7064.1.S1_s_at--931--2071Chr02:3182463..3182487 (25 bp)
ACATTGCACGGATTGGTCTCAGCTG
LOC_Os02g06360
Os.7064.1.S1_s_at--523--8531Chr02:3182486..3182510 (25 bp)
TGGACTATAATCTTTTCGCCTCATC
LOC_Os02g06360
Os.7064.1.S1_s_at--803--6191Chr02:3182627..3182651 (25 bp)
GAGGCATTGTTTACCAGTGTCTCCT
LOC_Os02g06360
Os.7064.1.S1_s_at--884--7451Chr02:3182643..3182667 (25 bp)
GTGTCTCCTACGTCTAGTGTTCTAA
LOC_Os02g06360
Os.7064.1.S1_s_at--212--10711Chr02:3182684..3182708 (25 bp)
TTGCTCGCTGGATGAATGTACCCTT
LOC_Os02g06360
Os.7064.1.S1_s_at--774--6971Chr02:3182701..3182725 (25 bp)
GTACCCTTCCCTCTGTAAATGAATG
LOC_Os02g06360
Target Sequence 
GGATCAACTCACTGAACTCACTAGTAAAGGCTGTGGGTGTCTACTTGTGGTTGATGATGAGTACCATTTGATCGGAACTT
TCACTGATGGTGATCTCCGGCGTACACTCAAGGCAAGTGGGCAAGCAATTTTCAATCTGACAGTTGGAGAGATGTGCAAC
AGGCACCCAAGAACAATCACCGCTGATGCAATGGCAGTACAGGCCATGGAGAAGATGGAATCNCCCCCTTCTCCGGTGCA
GTTCTTGCCAGTTGTTGATAGCAACAACGTTGTCTGTGGGATCATCACATTGCACGGATTGGTCTCAGCTGGACTATAAT
CTTTTCGCCTCATCTCCTTGNCGATTCTTTGCAAGTATTTNGGTCNAGTACATCATCACGCTGGNTGCATGGATTCTTGT
CANATGGTGACGCCTTATCTTTGTACTAGTACGTGTAGCCTAGAGTGTTAAAGAGGCATTGTTTACCAGTGTCTCCTACG
TCTAGTGTTCTAAAAGAGCAATGTGACAGTTGCTCGCTGGATGAATGTACCCTTCCCTCTGTAAATGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7064.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis