Browse Element(s) Details


OsAffx.24128.1.S1_s_at

Description tigr:9630.m00562
TID=OsAffx.24128.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0633011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06290OsAffx.24125.1.S1_at11/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06290OsAffx.24125.1.S1_s_at10/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06300Os.14283.1.A1_at11/112+3144057..3152625GTP-binding protein LepA containing protein, expressed
LOC_Os02g06310Os.45422.1.S1_x_at2/112+3154192..3157440hypothetical protein
LOC_Os02g06320OsAffx.24127.1.S1_at10/112+3158637..3160600RNA recognition motif 2 family protein
LOC_Os02g06330OsAffx.24128.1.S1_s_at11/112+3163942..3165032AP2 domain containing protein, expressed
LOC_Os02g06340Os.24778.1.S1_at11/112+3166615..3170814EH-domain containing protein 1, putative, expressed
LOC_Os02g06350OsAffx.18139.2.S1_at10/112+3171932..3174989hypothetical protein
LOC_Os02g06350Os.55379.1.S1_x_at1/112+3171932..3174989hypothetical protein
LOC_Os02g06360Os.7064.1.S1_s_at11/112+3179627..3182762KpsF/GutQ family protein, expressed
LOC_Os02g06370Os.32450.1.S1_at10/112+3182870..3187022DNA-binding protein, putative, expressed
LOC_Os02g06380OsAffx.24129.1.S1_at10/112+3188102..3190109uncharacterized plant-specific domain TIGR01627 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009864biological_processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24128.1.S1_s_at--1090--7151Chr02:3164379..3164403 (25 bp)
GTCTCCAGCAATCTCCGGCGAACTC
LOC_Os02g06330
OsAffx.24128.1.S1_s_at--813--2671Chr02:3164320..3164344 (25 bp)
AAGCAGCAAGAACCGACGAACTGGT
LOC_Os02g06330
OsAffx.24128.1.S1_s_at--505--1411Chr02:3164312..3164336 (25 bp)
AGAACCGACGAACTGGTACTGGATT
LOC_Os02g06330
OsAffx.24128.1.S1_s_at--342--5631Chr02:3164220..3164244 (25 bp)
GACACGGATAATTATTTCTTCTTTT
LOC_Os02g06330
OsAffx.24128.1.S1_s_at--752--3672Chr07:4418853..4418873 (21 bp)
CTTTTTCACCACTCAGGATTTGATA
NONE
OsAffx.24128.1.S1_s_at--777--3371Chr02:3164160..3164184 (25 bp)
CACCACTCAGGATTTGATACTCCTC
LOC_Os02g06330
OsAffx.24128.1.S1_s_at--85--6531Chr02:3164150..3164174 (25 bp)
GATTTGATACTCCTCTTATGTGATA
LOC_Os02g06330
OsAffx.24128.1.S1_s_at--3--10791Chr02:3164147..3164171 (25 bp)
TTGATACTCCTCTTATGTGATAATG
LOC_Os02g06330
OsAffx.24128.1.S1_s_at--1126--311Chr02:3164144..3164168 (25 bp)
ATACTCCTCTTATGTGATAATGTGA
LOC_Os02g06330
OsAffx.24128.1.S1_s_at--868--751Chr02:3164125..3164149 (25 bp)
ATGTGAATAACTTTATCATGTAAAC
LOC_Os02g06330
OsAffx.24128.1.S1_s_at--26--8871Chr02:3164098..3164122 (25 bp)
TGAGTAAAATTCGGTATTTCCGCCG
LOC_Os02g06330
Target Sequence 
GTCTCCAGCAATCTCCGGCGAACTCTAGCCTACGACGACCACGACCACGACCAACCAGCAAGCAGCAAGAACCGACGAAC
TGGTACTGGATTGCTGTGCTCCAATCCAACCATCGCCATTGCTGCTACTGCGAAGAAGCTCTCTACCATCTCCTCCATAG
ACACGGATAATTATTTCTTCTTTTTTTCTTTTTGTTTTCGTTTTCTTCTATCTCTTTTTCACCACTCAGGATTTGATACT
CCTCTTATGTGATAATGTGAATAACTTTATCATGTAAACCGTGAGTAAAATTCGGTATTTCCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24128.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis