Browse Element(s) Details


OsAffx.24125.1.S1_at

Description tigr:9630.m00558
TID=OsAffx.24125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AT5g66170K2A18_25
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0629011/11Rhodanese-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06230Os.51693.1.S1_at7/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06230Os.53737.1.S1_at4/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06240OsAffx.11913.1.S1_at11/112+3119601..3120817Leucine Rich Repeat family protein
LOC_Os02g06250OsAffx.11914.1.S1_at11/112+3124209..3126567Leucine Rich Repeat family protein
LOC_Os02g06260OsAffx.11915.2.S1_at11/112+3126964..3129254Leucine Rich Repeat family protein, expressed
LOC_Os02g06270Os.24551.4.S1_at9/112+3132848..3135043Leucine Rich Repeat family protein
LOC_Os02g06280OsAffx.24124.1.S1_at11/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06280Os.46824.2.S1_at1/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06290OsAffx.24125.1.S1_at11/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06290OsAffx.24125.1.S1_s_at10/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06300Os.14283.1.A1_at11/112+3144057..3152625GTP-binding protein LepA containing protein, expressed
LOC_Os02g06310Os.45422.1.S1_x_at2/112+3154192..3157440hypothetical protein
LOC_Os02g06320OsAffx.24127.1.S1_at10/112+3158637..3160600RNA recognition motif 2 family protein
LOC_Os02g06330OsAffx.24128.1.S1_s_at11/112+3163942..3165032AP2 domain containing protein, expressed
LOC_Os02g06340Os.24778.1.S1_at11/112+3166615..3170814EH-domain containing protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24125.1.S1_at--544--8631Chr02:3142672..3142696 (25 bp)
TGGGAAGGATTTTGACAAGGCGCAT
LOC_Os02g06290
OsAffx.24125.1.S1_at--928--891Chr02:3142689..3142713 (25 bp)
AGGCGCATGCTGACGGTGCTCGCAA
LOC_Os02g06290
OsAffx.24125.1.S1_at--873--4111Chr02:3142692..3142716 (25 bp)
CGCATGCTGACGGTGCTCGCAACAT
LOC_Os02g06290
OsAffx.24125.1.S1_at--247--4991Chr02:3142693..3142717 (25 bp)
GCATGCTGACGGTGCTCGCAACATT
LOC_Os02g06290
OsAffx.24125.1.S1_at--924--3511Chr02:3142694..3142718 (25 bp)
CATGCTGACGGTGCTCGCAACATTT
LOC_Os02g06290
OsAffx.24125.1.S1_at--136--631Chr02:3142695..3142719 (25 bp)
ATGCTGACGGTGCTCGCAACATTTC
LOC_Os02g06290
OsAffx.24125.1.S1_at--37--9111Chr02:3142696..3142720 (25 bp)
TGCTGACGGTGCTCGCAACATTTCC
LOC_Os02g06290
OsAffx.24125.1.S1_at--850--4751Chr02:3142697..3142721 (25 bp)
GCTGACGGTGCTCGCAACATTTCCT
LOC_Os02g06290
OsAffx.24125.1.S1_at--319--8951Chr02:3142699..3142723 (25 bp)
TGACGGTGCTCGCAACATTTCCTAC
LOC_Os02g06290
OsAffx.24125.1.S1_at--1139--1871Chr02:3142701..3142725 (25 bp)
ACGGTGCTCGCAACATTTCCTACTA
LOC_Os02g06290
OsAffx.24125.1.S1_at--504--7771Chr02:3142703..3142727 (25 bp)
GGTGCTCGCAACATTTCCTACTACC
LOC_Os02g06290
Target Sequence 
TGGGAAGGATTTTGACAAGGCGCATGCTGACGGTGCTCGCAACATTTCCTACTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis