Browse Element(s) Details


OsAffx.24124.1.S1_at

Description tigr:9630.m00557
TID=OsAffx.24124.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0628011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06220OsAffx.2519.1.S1_at11/112+3113443..3114237Conotoxin family protein, expressed
LOC_Os02g06230Os.51693.1.S1_at7/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06230Os.53737.1.S1_at4/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06240OsAffx.11913.1.S1_at11/112+3119601..3120817Leucine Rich Repeat family protein
LOC_Os02g06250OsAffx.11914.1.S1_at11/112+3124209..3126567Leucine Rich Repeat family protein
LOC_Os02g06260OsAffx.11915.2.S1_at11/112+3126964..3129254Leucine Rich Repeat family protein, expressed
LOC_Os02g06270Os.24551.4.S1_at9/112+3132848..3135043Leucine Rich Repeat family protein
LOC_Os02g06280OsAffx.24124.1.S1_at11/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06280Os.46824.2.S1_at1/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06290OsAffx.24125.1.S1_at11/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06290OsAffx.24125.1.S1_s_at10/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06300Os.14283.1.A1_at11/112+3144057..3152625GTP-binding protein LepA containing protein, expressed
LOC_Os02g06310Os.45422.1.S1_x_at2/112+3154192..3157440hypothetical protein
LOC_Os02g06320OsAffx.24127.1.S1_at10/112+3158637..3160600RNA recognition motif 2 family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24124.1.S1_at--221--5051Chr02:3137614..3137638 (25 bp)
GCAGCAATCTAACCACATTACAGCT
LOC_Os02g06280
OsAffx.24124.1.S1_at--839--271Chr02:3137552..3137576 (25 bp)
ATAGACAACCTGAAGTCCCTCGTTT
LOC_Os02g06280
OsAffx.24124.1.S1_at--1119--7671Chr02:3136900..3136924 (25 bp)
GGGTATTTGAACTTCCTGTTTATGC
LOC_Os02g06280
OsAffx.24124.1.S1_at--597--10111Chr02:3136850..3136874 (25 bp)
TATGGTATGACCAATGCTCTCCCTG
LOC_Os02g06280
OsAffx.24124.1.S1_at--781--3151Chr02:3136788..3136812 (25 bp)
AATTCCTTCAGAGGTCGGCCAGCTG
LOC_Os02g06280
OsAffx.24124.1.S1_at--1156--5911Chr02:3136740..3136764 (25 bp)
GAGCTTCAACAGCTCTTCAGGGCAT
LOC_Os02g06280
OsAffx.24124.1.S1_at--525--7591Chr02:3136721..3136745 (25 bp)
GGGCATATTCCACCGAAACTTTTCA
LOC_Os02g06280
OsAffx.24124.1.S1_at--255--10031Chr02:3136675..3136699 (25 bp)
TAGAATTGTCTAACCTCCATCTCAC
LOC_Os02g06280
OsAffx.24124.1.S1_at--909--3471Chr02:3136651..3136675 (25 bp)
CAGGTTCAATCCCACCAGGACTGAA
LOC_Os02g06280
OsAffx.24124.1.S1_at--15--971Chr02:3136635..3136659 (25 bp)
AGGACTGAACAATGTGCACTCACTT
LOC_Os02g06280
OsAffx.24124.1.S1_at--1025--4131Chr02:3136238..3136557 (25 bp)
CCCAAAGCTGTGTGGTTTTCCTATG
LOC_Os02g06280
Target Sequence 
GCAGCAATCTAACCACATTACAGCTATCTTCAAACAAATTCTATGGCCAGTTGTCACCAAGAATAGACAACCTGAAGTCC
CTCGTTTTTGCCGGGGTATTTGAACTTCCTGTTTATGCTGATTATGAAGAGCCATCACTTACATATGGTATGACCAATGC
TCTCCCTGCAATGCTAAATCTTGGAAACAATAAGCTTACTGGTGCAATTCCTTCAGAGGTCGGCCAGCTGAAATCACTCA
CAGTGCTCTTCTTGAGCTTCAACAGCTCTTCAGGGCATATTCCACCGAAACTTTTCAACCTGACAAATCTGCAAGTGTTA
GAATTGTCTAACCTCCATCTCACAGGTTCAATCCCACCAGGACTGAACAATGTGCACTCACTTTCAATATTTGATGTTTC
TAACAACGACTTAGAGGGGTCAGTTCCAATTGGATATGAGTATTGGGGTTTTGATGGGAACCCAAAGCTGTGTGGTTTTC
CTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis