Browse Element(s) Details


Os.51693.1.S1_at

Description gb:AK063437.1
DB_XREF= gi:32973455
TID=Os.51693.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E07, full insert sequence.
FL= gb:AK063437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3312011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os08g2956011/11retrotransposon protein, putative, unclassified
LOC_Os12g0531011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os02g062307/11retrotransposon protein, putative, unclassified
LOC_Os10g337901/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33070NANA5+19311615..19312267hypothetical protein
LOC_Os05g33080Os.54825.1.S1_at11/115+19315766..19320371Protein kinase domain containing protein, expressed
LOC_Os05g33090OsAffx.4505.1.S1_at11/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_at7/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_x_at5/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.23061.1.S2_at2/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.32257.1.A1_at1/115+19322162..19323654hypothetical protein
LOC_Os05g33100Os.7671.1.S1_at11/115+19326441..19330448Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33110Os.6223.1.S1_at11/115+19332246..19340091Dienelactone hydrolase family protein, expressed
LOC_Os05g33120Os.51693.1.S1_at11/115+19335050..19337712retrotransposon protein, putative, unclassified, expressed
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed
LOC_Os05g33140Os.47564.1.S1_at4/115+19352215..19353581Basic endochitinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51693.1.S1_at--1137--9534Chr08:17994315..17994339 (25 bp)
TCTTTCTGAGTTAAAGTTGTCGGTG
LOC_Os08g29560
Os.51693.1.S1_at--765--9454Chr08:17994319..17994343 (25 bp)
TCTGAGTTAAAGTTGTCGGTGGATA
LOC_Os08g29560
Os.51693.1.S1_at--977--10474Chr08:17994325..17994349 (25 bp)
TTAAAGTTGTCGGTGGATACTCCCA
LOC_Os08g29560
Os.51693.1.S1_at--1082--9834Chr08:17994326..17994350 (25 bp)
TAAAGTTGTCGGTGGATACTCCCAT
LOC_Os08g29560
Os.51693.1.S1_at--7--2334Chr08:17994327..17994351 (25 bp)
AAAGTTGTCGGTGGATACTCCCATG
LOC_Os08g29560
Os.51693.1.S1_at--18--2834Chr08:17994328..17994352 (25 bp)
AAGTTGTCGGTGGATACTCCCATGA
LOC_Os08g29560
Os.51693.1.S1_at--346--1254Chr08:17994329..17994353 (25 bp)
AGTTGTCGGTGGATACTCCCATGAA
LOC_Os08g29560
Os.51693.1.S1_at--391--8659Chr08:17994608..17994632 (25 bp)
TGGGCTGTAAATAGAATAGTGTGTG
NONE
Os.51693.1.S1_at--644--7438Chr08:17994636..17994660 (25 bp)
GTGTTTGTGTGCTGGCCCATCAGCT
NONE
Os.51693.1.S1_at--756--8778Chr08:17994637..17994661 (25 bp)
TGTTTGTGTGCTGGCCCATCAGCTA
NONE
Os.51693.1.S1_at--423--2238Chr08:17994687..17994711 (25 bp)
AAATAACGATAGCAATACTGAAGGG
NONE
Target Sequence 
TCTTTCTGAGTTAAAGTTGTCGGTGGATACTCCCATGAAATTGTGGTGTGACAACAAGTCAGCAATCAACATTGCTAACA
ACCCAGTTCAGCATGATCGAACAAAGCATGTGGAGTTGGATCGTTTCTTTATCAAGGAAAAACTGGATGAGGGAGTTTTG
GAATTAGAATTTGTAACGTCTAGTGGACAAGTTGCTGATTGTTTAACAAAGGGTTTAGGTGTTAAAGAGTGTAATCGTTC
GTGTGACAAGATGGGTATGATAGATATCTATCACCCATCTTGAGGGGGAGTGTTGGGCTGTAAATAGAATAGTGTGTGTG
TGTGTGTGTTTGTGTGCTGGCCCATCAGCTAGAGGCCCATCTACTCATGTATATGTAAATAACGATAGCAATACTGAAGG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis