Browse Element(s) Details


Os.6223.1.S1_at

Description gb:AK101507.1
DB_XREF= gi:32986716
TID=Os.6223.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044O16, full insert sequence.
FL= gb:AK101507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3311011/11Dienelactone hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33070NANA5+19311615..19312267hypothetical protein
LOC_Os05g33080Os.54825.1.S1_at11/115+19315766..19320371Protein kinase domain containing protein, expressed
LOC_Os05g33090OsAffx.4505.1.S1_at11/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_at7/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_x_at5/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.23061.1.S2_at2/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.32257.1.A1_at1/115+19322162..19323654hypothetical protein
LOC_Os05g33100Os.7671.1.S1_at11/115+19326441..19330448Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33110Os.6223.1.S1_at11/115+19332246..19340091Dienelactone hydrolase family protein, expressed
LOC_Os05g33120Os.51693.1.S1_at11/115+19335050..19337712retrotransposon protein, putative, unclassified, expressed
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed
LOC_Os05g33140Os.47564.1.S1_at4/115+19352215..19353581Basic endochitinase 1 precursor, putative, expressed
LOC_Os05g33150Os.4976.1.S1_at8/115+19362755..1936434526 kDa endochitinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6223.1.S1_at--283--2331Chr05:19334503..19334527 (25 bp)
AAAGTCCATGAAATCCAGGCTGCTG
LOC_Os05g33110
Os.6223.1.S1_at--793--1811Chr05:19334537..19334561 (25 bp)
ACCCTTCTTTACTTGCTGTCGATGA
LOC_Os05g33110
Os.6223.1.S1_at--917--1391Chr05:19334706..19334730 (25 bp)
AGACGTCTCCACCAGAGCTGTTAAA
LOC_Os05g33110
Os.6223.1.S1_at--959--6851Chr05:19334734..19334758 (25 bp)
GTTTGAGCAGATCCTTTCTCCTAAC
LOC_Os05g33110
Os.6223.1.S1_at--830--6051Chr05:19339676..19339699 (24 bp)
GAGATTGCTCACTTCGTCAAGATTT
LOC_Os05g33110
Os.6223.1.S1_at--1051--3991Chr05:19339689..19339713 (25 bp)
CGTCAAGATTTTCCCCGGCGTAGAG
LOC_Os05g33110
Os.6223.1.S1_at--925--10451Chr05:19339827..19339851 (25 bp)
TTAGCAGCTCTCCATGTACCAAGAT
LOC_Os05g33110
Os.6223.1.S1_at--507--4471Chr05:19339905..19339929 (25 bp)
GCCTGAACTTCGTTTATGCCATTGT
LOC_Os05g33110
Os.6223.1.S1_at--1080--9751Chr05:19339934..19339958 (25 bp)
TAATGGCGTGTGTGCTTCCGTTCCA
LOC_Os05g33110
Os.6223.1.S1_at--960--771Chr05:19339958..19339982 (25 bp)
ATGTGCCTCATGATACTTACTTTTA
LOC_Os05g33110
Os.6223.1.S1_at--454--7471Chr05:19340002..19340026 (25 bp)
GTGTGAGGTTGATCCAATCCTGCAC
LOC_Os05g33110
Target Sequence 
AAAGTCCATGAAATCCAGGCTGCTGTATTGCTACACCCTTCTTTACTTGCTGTCGATGACATCAAAGAAGTCAAATGCCC
AATTTCTATACTTGGTGCTGAAATTGACAAGACGTCTCCACCAGAGCTGTTAAAGCAGTTTGAGCAGATCCTTTCTCCTA
ACCCCGAGATTGCTCACTTCGTCAAGATTTTCCCCGGCGTAGAGCATGGATGGGCTGTGAGATACAATCACGATGATGCA
GCTGCCGTCAAGAGCGCTGAGGAAGCCCTGGAAGACATGATGGATTGGTTCAAGAAATACCTGAAGTAAAATCTGAATTA
GCAGCTCTCCATGTACCAAGATATTGCTAAGTGCTAGCTAATGCACGAACAGCTGATCTTGATATGCCATTTTGGGCCTG
AACTTCGTTTATGCCATTGTGTTGTAATGGCGTGTGTGCTTCCGTTCCATGTGCCTCATGATACTTACTTTTAGTACTAT
TTCTGAACATGTGTGTGAGGTTGATCCAATCCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis