Browse Element(s) Details


Os.26748.1.S1_at

Description gb:AK058861.1
DB_XREF= gi:32968879
TID=Os.26748.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative PSII low MW protein from chromosome 10 chloroplast insertion (OSJNBb0075K12.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-F02, full insert sequence.
FL= gb:AK058861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g330907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33060OsAffx.4504.1.S1_x_at11/115+19296765..19297268hypothetical protein
LOC_Os05g33070NANA5+19311615..19312267hypothetical protein
LOC_Os05g33080Os.54825.1.S1_at11/115+19315766..19320371Protein kinase domain containing protein, expressed
LOC_Os05g33090OsAffx.4505.1.S1_at11/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_at7/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_x_at5/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.23061.1.S2_at2/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.32257.1.A1_at1/115+19322162..19323654hypothetical protein
LOC_Os05g33100Os.7671.1.S1_at11/115+19326441..19330448Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33110Os.6223.1.S1_at11/115+19332246..19340091Dienelactone hydrolase family protein, expressed
LOC_Os05g33120Os.51693.1.S1_at11/115+19335050..19337712retrotransposon protein, putative, unclassified, expressed
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26748.1.S1_at--152--1014Chr10:10492367..10492391 (25 bp)
AGGATACCCTTTTCCCTCTCCATGG
NONE
Os.26748.1.S1_at--370--10394Chr10:10492376..10492400 (25 bp)
TTTTCCCTCTCCATGGGATTACATC
NONE
Os.26748.1.S1_at--879--3774Chr10:10492382..10492406 (25 bp)
CTCTCCATGGGATTACATCCCGAGT
NONE
Os.26748.1.S1_at--688--7934Chr10:10492391..10492415 (25 bp)
GGATTACATCCCGAGTTATTGCGAA
NONE
Os.26748.1.S1_at--993--134Chr10:10492393..10492417 (25 bp)
ATTACATCCCGAGTTATTGCGAAAA
NONE
Os.26748.1.S1_at--447--9874Chr10:10492395..10492419 (25 bp)
TACATCCCGAGTTATTGCGAAAAAA
NONE
Os.26748.1.S1_at--801--2434Chr10:10492418..10492442 (25 bp)
AAAAGAGGTTATGGAAGTCAATATT
NONE
Os.26748.1.S1_at--948--2252Chr10:10492725..10492749 (25 bp)
AAATAGTAGTCTAATTCAATTTCTT
NONE
Os.26748.1.S1_at--857--3112Chr10:10492742..10492766 (25 bp)
AATTTCTTTTTTCACTGCATCCACT
NONE
Os.26748.1.S1_at--615--10573Chr10:10492745..10492769 (25 bp)
TTCTTTTTTCACTGCATCCACTTAA
NONE
Os.26748.1.S1_at--1074--10353Chr10:10492750..10492774 (25 bp)
TTTTCACTGCATCCACTTAATTTCA
NONE
Target Sequence 
AGGATACCCTTTTCCCTCTCCATGGGATTACATCCCGAGTTATTGCGAAAAAAAAAGAGGTTATGGAAGTCAATATTCTC
GCATTTATTGCTACTGCNTTGTTCATTCTAGTTCCTACTGCCTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAA
TGATTAATTGGAAGTTCAATTAATCATTGAAGAAATGAAAAAGGGATTAAATAAAATAAAAATCCAAGTCTTAAATGAAA
GGATCCGGTTGGAATCATAAAGTGTGGTANGAAAAAACTACATATAGTTTTTTCTACCACACTTTAGAGTCTTTCTATTA
TATTATCTTGAATCTACATAGAATAGATTACTAGATTGAAATAGTAGTCTAATTCAATTTCTTTTTTCACTGCATCCACT
TAATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis