Browse Element(s) Details


OsAffx.4504.1.S1_x_at

Description tigr:9633.m03037
TID=OsAffx.4504.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3306011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33010Os.11972.1.S1_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33010Os.11972.1.S1_s_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_s_at11/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_at9/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.24220.1.A1_at1/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33040Os.8306.1.S1_at11/115+19280554..19282706Cyclin, N-terminal domain containing protein, expressed
LOC_Os05g33050OsAffx.4503.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33050Os.7606.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33060OsAffx.4504.1.S1_x_at11/115+19296765..19297268hypothetical protein
LOC_Os05g33070NANA5+19311615..19312267hypothetical protein
LOC_Os05g33080Os.54825.1.S1_at11/115+19315766..19320371Protein kinase domain containing protein, expressed
LOC_Os05g33090OsAffx.4505.1.S1_at11/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_at7/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_x_at5/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.23061.1.S2_at2/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.32257.1.A1_at1/115+19322162..19323654hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4504.1.S1_x_at--1027--1571Chr05:19296815..19296839 (25 bp)
AGCTCGGCGACGTCCGGATCTGAGA
LOC_Os05g33060
OsAffx.4504.1.S1_x_at--426--8331Chr05:19296922..19296946 (25 bp)
GGCTCCCGGATCTAAGAAGAGCGGC
LOC_Os05g33060
OsAffx.4504.1.S1_x_at--370--4691Chr05:19297047..19297071 (25 bp)
GCGGAGGCGGTAGCGCTCGCGGAGG
LOC_Os05g33060
OsAffx.4504.1.S1_x_at--893--6711Chr05:19297118..19297142 (25 bp)
GTTCGTCCGCCAGTTTTTTATGGAT
LOC_Os05g33060
OsAffx.4504.1.S1_x_at--858--10591Chr05:19297119..19297143 (25 bp)
TTCGTCCGCCAGTTTTTTATGGATC
LOC_Os05g33060
OsAffx.4504.1.S1_x_at--111--9411Chr05:19297120..19297144 (25 bp)
TCGTCCGCCAGTTTTTTATGGATCG
LOC_Os05g33060
OsAffx.4504.1.S1_x_at--374--3971Chr05:19297121..19297145 (25 bp)
CGTCCGCCAGTTTTTTATGGATCGG
LOC_Os05g33060
OsAffx.4504.1.S1_x_at--935--6591Chr05:19297130..19297154 (25 bp)
GTTTTTTATGGATCGGTTGGTCCTG
LOC_Os05g33060
OsAffx.4504.1.S1_x_at--228--10351Chr05:19297131..19297155 (25 bp)
TTTTTTATGGATCGGTTGGTCCTGG
LOC_Os05g33060
OsAffx.4504.1.S1_x_at--283--10113Chr11:21497289..21497310 (22 bp)
TATGGATCGGTTGGTCCTGGATCTG
NONE
OsAffx.4504.1.S1_x_at--103--10291Chr05:19297170..19297194 (25 bp)
TTTCTCTCCTGGGACCAACCCATCG
LOC_Os05g33060
Target Sequence 
AGCTCGGCGACGTCCGGATCTGAGAGGAGCGGCGGTGGTGCTCGTGGAGGTAGCGGCGGCGGCGGTCGCAGACGAGGCAG
AGGTGGCGGCGGTCGTGGAGGCGCGGCGGCTCCCGGATCTAAGAAGAGCGGCGGCGGTGCTCGTGGACGAGGCGGCGGCG
TTCGCGGACGAGGCGGAGGCGGCGGCAGGCGCGGACGAGGCGGCGGCGCTCGCGGAGGTGGCGCTCGTGGAGGCGGAGGC
GGTAGCGCTCGCGGAGGTGGCGGATGGCGCGGTGACGCCGTTCGCTCGTCCCAGGTGGGACAAGTTCGTCCGCCAGTTTT
TTATGGATCGGTTGGTCCTGGATCTGAGAGGAATATTTCTCTCCTGGGACCAACCCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4504.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis