Browse Element(s) Details


OsAffx.4503.1.S1_at

Description tigr:9633.m03036
TID=OsAffx.4503.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3305011/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33000OsAffx.27130.1.S1_at11/115+19257694..19262043zinc finger family protein, putative, expressed
LOC_Os05g33020Os.37864.1.A1_at11/115+19263013..19270242secY family protein, putative, expressed
LOC_Os05g33010Os.11972.1.S1_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33010Os.11972.1.S1_s_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_s_at11/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_at9/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.24220.1.A1_at1/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33040Os.8306.1.S1_at11/115+19280554..19282706Cyclin, N-terminal domain containing protein, expressed
LOC_Os05g33050OsAffx.4503.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33050Os.7606.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33060OsAffx.4504.1.S1_x_at11/115+19296765..19297268hypothetical protein
LOC_Os05g33070NANA5+19311615..19312267hypothetical protein
LOC_Os05g33080Os.54825.1.S1_at11/115+19315766..19320371Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4503.1.S1_at--139--1491Chr05:19288464..19288488 (25 bp)
AGCACTTTCTCCCATGGATGCTGCA
LOC_Os05g33050
OsAffx.4503.1.S1_at--653--5631Chr05:19287051..19287075 (25 bp)
GACACTTTCAGATGTTACCTTCTTG
LOC_Os05g33050
OsAffx.4503.1.S1_at--802--8151Chr05:19286918..19286942 (25 bp)
GGAAAGCGCTTTTATGCACATAGAA
LOC_Os05g33050
OsAffx.4503.1.S1_at--237--71Chr05:19286894..19286918 (25 bp)
ATTGCATTACTTGCTTCTTCGGATG
LOC_Os05g33050
OsAffx.4503.1.S1_at--364--4911Chr05:19286882..19286906 (25 bp)
GCTTCTTCGGATGCATTTCGTGCAA
LOC_Os05g33050
OsAffx.4503.1.S1_at--29--10011Chr05:19286458..19286482 (25 bp)
TAGCGATATCTCTCAGGATCTTCTT
LOC_Os05g33050
OsAffx.4503.1.S1_at--917--991Chr05:19286444..19286468 (25 bp)
AGGATCTTCTTAGAGCTGCTGATCA
LOC_Os05g33050
OsAffx.4503.1.S1_at--810--5291Chr05:19286409..19286433 (25 bp)
GAAGGCCTCAAACGTCTGTGTGAAT
LOC_Os05g33050
OsAffx.4503.1.S1_at--389--3251Chr05:19286283..19286307 (25 bp)
CAACGTTTCTGACATGTATGACCTA
LOC_Os05g33050
OsAffx.4503.1.S1_at--471--5391Chr05:19286255..19286279 (25 bp)
GAAGCTTTTCATGCAATGTCACTCA
LOC_Os05g33050
OsAffx.4503.1.S1_at--820--2111Chr05:19286225..19286249 (25 bp)
ACATGTGTCCTATTTATCTTGGAGC
LOC_Os05g33050
Target Sequence 
AGCACTTTCTCCCATGGATGCTGCACCTCCATCTCCAACACCACAGGTTTATCTTGGTGAGCAATATGTGAACAGTTCGA
CACTTTCAGATGTTACCTTCTTGGTGGAAGGAAAGCGCTTTTATGCACATAGAATTGCATTACTTGCTTCTTCGGATGCA
TTTCGTGCAATGTTTGATGGCGGATATAGGGAAAAGGACGCGAGAGACATAGAAATTCCAAATATCAGATGGAATGTGTT
TGAACTCATGATGAGATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGATATCTCTCAGGATCTTCTTAGAGCTGCTG
ATCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAATTGCGCAGGATGTGAATGTAGACAACGTTTCTGAC
ATGTATGACCTATCTGAAGCTTTTCATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis