Browse Element(s) Details


Os.7606.1.S1_at

Description gb:AU101542
DB_XREF= gi:9865792
DB_XREF=AU101542
CLONE=E61268
TID=Os.7606.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7606 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3305011/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33000OsAffx.27130.1.S1_at11/115+19257694..19262043zinc finger family protein, putative, expressed
LOC_Os05g33020Os.37864.1.A1_at11/115+19263013..19270242secY family protein, putative, expressed
LOC_Os05g33010Os.11972.1.S1_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33010Os.11972.1.S1_s_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_s_at11/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_at9/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.24220.1.A1_at1/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33040Os.8306.1.S1_at11/115+19280554..19282706Cyclin, N-terminal domain containing protein, expressed
LOC_Os05g33050OsAffx.4503.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33050Os.7606.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33060OsAffx.4504.1.S1_x_at11/115+19296765..19297268hypothetical protein
LOC_Os05g33070NANA5+19311615..19312267hypothetical protein
LOC_Os05g33080Os.54825.1.S1_at11/115+19315766..19320371Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.7606.1.S1_at--612--2091Chr05:19285942..19285966 (25 bp)
ACATCTGACAGTCGCTTCGGGAGAT
LOC_Os05g33050
Os.7606.1.S1_at--192--3651Chr05:19285928..19285952 (25 bp)
CTTCGGGAGATCTTGTACAGCTAAA
LOC_Os05g33050
Os.7606.1.S1_at--574--1191Chr05:19285903..19285927 (25 bp)
AGTTTCTTTTTCTGGCGTTGGACAT
LOC_Os05g33050
Os.7606.1.S1_at--882--3911Chr05:19285892..19285916 (25 bp)
CTGGCGTTGGACATTGGCATTCGAT
LOC_Os05g33050
Os.7606.1.S1_at--746--8271Chr05:19285877..19285901 (25 bp)
GGCATTCGATGGCACCAACAACATT
LOC_Os05g33050
Os.7606.1.S1_at--375--2491Chr05:19285858..19285882 (25 bp)
AACATTGTAACATCCTTTTATTCGA
LOC_Os05g33050
Os.7606.1.S1_at--768--851Chr05:19285801..19285825 (25 bp)
ATGGCTTAGCCAGCCATGTCTCGGA
LOC_Os05g33050
Os.7606.1.S1_at--641--6811Chr05:19285748..19285772 (25 bp)
GTTTCGCCTTGGCATAGTCACCGAG
LOC_Os05g33050
Os.7606.1.S1_at--11--10051Chr05:19285734..19285758 (25 bp)
TAGTCACCGAGTTTAGGGCCACTTT
LOC_Os05g33050
Os.7606.1.S1_at--60--3451Chr05:19285707..19285731 (25 bp)
CAGTCCAGAGCTCCGTGTATGTCCG
LOC_Os05g33050
Os.7606.1.S1_at--1036--8751Chr05:19285692..19285716 (25 bp)
TGTATGTCCGTCTCTTTGATGATGC
LOC_Os05g33050
Target Sequence
ACATCTGACAGTCGCTTCGGGAGATCTTGTACAGCTAAAAGTTTCTTTTTCTGGCGTTGGACATTGGCATTCGATGGCAC
CAACAACATTGTAACATCCTTTTATTCGANTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGT
CTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTC
CAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis