Browse Element(s) Details


Os.37864.1.A1_at

Description gb:AK067298.1
DB_XREF= gi:32977316
TID=Os.37864.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106K06, full insert sequence.
FL= gb:AK067298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3302011/11secY family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32970Os.52270.1.S1_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.49159.1.A1_x_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.53103.1.S1_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.53103.1.S1_x_at11/115+19244289..19248341expressed protein
LOC_Os05g32980NANA5+19250881..19251281hypothetical protein
LOC_Os05g32990NANA5+19253513..19254490hypothetical protein
LOC_Os05g33000OsAffx.27130.1.S1_at11/115+19257694..19262043zinc finger family protein, putative, expressed
LOC_Os05g33020Os.37864.1.A1_at11/115+19263013..19270242secY family protein, putative, expressed
LOC_Os05g33010Os.11972.1.S1_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33010Os.11972.1.S1_s_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_s_at11/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_at9/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.24220.1.A1_at1/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33040Os.8306.1.S1_at11/115+19280554..19282706Cyclin, N-terminal domain containing protein, expressed
LOC_Os05g33050OsAffx.4503.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33050Os.7606.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009306biological_processprotein secretion
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37864.1.A1_at--842--6511Chr05:19263501..19263525 (25 bp)
GATATTTTGTTACTCATGGCACAGC
LOC_Os05g33020
Os.37864.1.A1_at--809--3171Chr05:19263442..19263466 (25 bp)
AATTGTGTTGTCTTTGGCCACTTCT
LOC_Os05g33020
Os.37864.1.A1_at--1088--4371Chr05:19263374..19263398 (25 bp)
CCAATCTCACCCAGCTGTATAATTT
LOC_Os05g33020
Os.37864.1.A1_at--1081--8471Chr05:19263324..19263348 (25 bp)
TGGCTAGCTGCATCACGCTTAGTAA
LOC_Os05g33020
Os.37864.1.A1_at--623--5451Chr05:19263237..19263261 (25 bp)
GAACGTTCTACATCAGAGGCTGGCG
LOC_Os05g33020
Os.37864.1.A1_at--121--7671Chr05:19263213..19263237 (25 bp)
GGGTTGACCATCTGGACTTATCCGT
LOC_Os05g33020
Os.37864.1.A1_at--450--8991Chr05:19263179..19263203 (25 bp)
TGAAGATCAGCTGTCGTGCGTTTGC
LOC_Os05g33020
Os.37864.1.A1_at--693--7291Chr05:19263164..19263188 (25 bp)
GTGCGTTTGCTGACCAGTAGTATCT
LOC_Os05g33020
Os.37864.1.A1_at--1119--6931Chr05:19263148..19263172 (25 bp)
GTAGTATCTCTCTGTAGGCTTATGT
LOC_Os05g33020
Os.37864.1.A1_at--265--8711Chr05:19263081..19263105 (25 bp)
TGTCCTGACTTCTCAAAGGCTGTTC
LOC_Os05g33020
Os.37864.1.A1_at--131--2951Chr05:19263066..19263090 (25 bp)
AAGGCTGTTCTGTTCACTTTTCCAA
LOC_Os05g33020
Target Sequence 
GATATTTTGTTACTCATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCAC
TTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAATTTGGATCCAATCTCACCCAGCTGTATAATTTTCTGAAGA
TCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGTCAGAACCTGAAGTCTGCAAAA
TTGCTGGTTTTGGGTTGATTGTTGGAACGTTCTACATCAGAGGCTGGCGGGTTGACCATCTGGACTTATCCGTGTAGCAC
AATGAAGATCAGCTGTCGTGCGTTTGCTGACCAGTAGTATCTCTCTGTAGGCTTATGTTTTTGTAAATATATGGCTTATT
AACAGTAGAACTTCCACTCCTGTCCTGACTTCTCAAAGGCTGTTCTGTTCACTTTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37864.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis