Browse Element(s) Details


Os.47919.1.A1_at

Description gb:AK102894.1
DB_XREF= gi:32988103
TID=Os.47919.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112N14, full insert sequence.
FL= gb:AK102894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g330309/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32980NANA5+19250881..19251281hypothetical protein
LOC_Os05g32990NANA5+19253513..19254490hypothetical protein
LOC_Os05g33000OsAffx.27130.1.S1_at11/115+19257694..19262043zinc finger family protein, putative, expressed
LOC_Os05g33020Os.37864.1.A1_at11/115+19263013..19270242secY family protein, putative, expressed
LOC_Os05g33010Os.11972.1.S1_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33010Os.11972.1.S1_s_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_s_at11/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_at9/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.24220.1.A1_at1/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33040Os.8306.1.S1_at11/115+19280554..19282706Cyclin, N-terminal domain containing protein, expressed
LOC_Os05g33050OsAffx.4503.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33050Os.7606.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33060OsAffx.4504.1.S1_x_at11/115+19296765..19297268hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47919.1.A1_at--360--6231Chr05:19279756..19279780 (25 bp)
GATGGCACCCCAGAAGCACGGCAAT
LOC_Os05g33030
Os.47919.1.A1_at--781--851Chr05:19279757..19279781 (25 bp)
ATGGCACCCCAGAAGCACGGCAATT
LOC_Os05g33030
Os.47919.1.A1_at--379--8511Chr05:19279758..19279782 (25 bp)
TGGCACCCCAGAAGCACGGCAATTG
LOC_Os05g33030
Os.47919.1.A1_at--238--8251Chr05:19279759..19279783 (25 bp)
GGCACCCCAGAAGCACGGCAATTGA
LOC_Os05g33030
Os.47919.1.A1_at--417--4811Chr05:19279974..19279998 (25 bp)
GCTCTCTGGTACTGGCATCTTCAAT
LOC_Os05g33030
Os.47919.1.A1_at--665--3771Chr05:19279975..19279999 (25 bp)
CTCTCTGGTACTGGCATCTTCAATC
LOC_Os05g33030
Os.47919.1.A1_at--1143--9451Chr05:19279978..19280002 (25 bp)
TCTGGTACTGGCATCTTCAATCCAG
LOC_Os05g33030
Os.47919.1.A1_at--749--3891Chr05:19279979..19280003 (25 bp)
CTGGTACTGGCATCTTCAATCCAGC
LOC_Os05g33030
Os.47919.1.A1_at--1120--6991Chr05:19279982..19280006 (25 bp)
GTACTGGCATCTTCAATCCAGCTCT
LOC_Os05g33030
Target Sequence 
GATGGCACCCCAGAAGCACGGCAATTGAGGAGAATCGAGTTCAGCAGTAGCAAGTTCAGAAGCCCTCCAGCGCTGGCCAG
GTTCAACTCAAGGAATAACNCCTNNGTCACCTCAGCAGAANCTGCGGNTAGCATCTGGCTCAGGAAATGCCAGCAAAATA
TGCTTCAGTGTTCAGAAGAGAGTGATCCTAGGTTCACCTGCTCCAGTGAAAAGCAGTCTGCTCTCTGGTACTGGCATCTT
CAATCCAGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47919.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis