Browse Element(s) Details

Os.24220.1.A1_at

Description

gb:CA761460
DB_XREF= gi:25805499
DB_XREF=BR060010A21C08.ab1
CLONE=BR060010A21C08.ab1
TID=Os.24220.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.24220 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g33030	1/11	Kinesin motor domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g32980	NA	NA	5	+	19250881..19251281	hypothetical protein
LOC_Os05g32990	NA	NA	5	+	19253513..19254490	hypothetical protein
LOC_Os05g33000	OsAffx.27130.1.S1_at	11/11	5	+	19257694..19262043	zinc finger family protein, putative, expressed
LOC_Os05g33020	Os.37864.1.A1_at	11/11	5	+	19263013..19270242	secY family protein, putative, expressed
LOC_Os05g33010	Os.11972.1.S1_at	11/11	5	+	19270410..19274754	DnaJ domain containing protein, expressed
LOC_Os05g33010	Os.11972.1.S1_s_at	11/11	5	+	19270410..19274754	DnaJ domain containing protein, expressed
LOC_Os05g33030	Os.47919.1.A1_s_at	11/11	5	+	19276069..19280326	Kinesin motor domain containing protein, expressed
LOC_Os05g33030	Os.47919.1.A1_at	9/11	5	+	19276069..19280326	Kinesin motor domain containing protein, expressed
LOC_Os05g33030	Os.24220.1.A1_at	1/11	5	+	19276069..19280326	Kinesin motor domain containing protein, expressed
LOC_Os05g33040	Os.8306.1.S1_at	11/11	5	+	19280554..19282706	Cyclin, N-terminal domain containing protein, expressed
LOC_Os05g33050	OsAffx.4503.1.S1_at	11/11	5	+	19285596..19294403	armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33050	Os.7606.1.S1_at	11/11	5	+	19285596..19294403	armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33060	OsAffx.4504.1.S1_x_at	11/11	5	+	19296765..19297268	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0003777	molecular_function	microtubule motor activity
GO:0008017	molecular_function	microtubule binding
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24220.1.A1_at--1090--291	1	Chr05:19279845..19279868 (24 bp)	AAGGAATAACGCCTTGTCACCTCAC	LOC_Os05g33030
Os.24220.1.A1_at--683--821	1	NONE	GGAATAACGCCTTGTCACCTCACCA	NONE
Os.24220.1.A1_at--212--979	1	NONE	TAACGCCTTGTCACCTCACCAAAAG	NONE
Os.24220.1.A1_at--662--415	1	NONE	CGCCTTGTCACCTCACCAAAAGATG	NONE
Os.24220.1.A1_at--742--243	1	NONE	AAAAGATGCGGCTAGCATCTGGCTC	NONE
Os.24220.1.A1_at--599--279	1	NONE	AAGATGCGGCTAGCATCTGGCTCAG	NONE
Os.24220.1.A1_at--1020--475	1	NONE	GCTCTCTGGTACTGGGGTTTTCAAT	NONE
Os.24220.1.A1_at--1041--767	1	NONE	GGGTTTTCAATCCAGCTTTGCGCGA	NONE
Os.24220.1.A1_at--848--787	1	NONE	GGTTTTCAATCCAGCTTTGCGCGAG	NONE
Os.24220.1.A1_at--252--681	1	NONE	GTTTTCAATCCAGCTTTGCGCGAGA	NONE
Os.24220.1.A1_at--933--1037	1	NONE	TTTTCAATCCAGCTTTGCGCGAGAA	NONE

Target Sequence

AAGGAATAACGCCTTGTCACCTCACCAAAAGATGCGGCTAGCATCTGGCTCAGGAAATGCCAGCAAAATATGCTTCAGTG
TTCAGAAGAGAGTGATCCTAGGTTCACCTGCTCCAGTGAAAAGCAGTTTGCTCTCTGGTACTGGGGTTTTCAATCCAGCT
TTGCGCGAGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis