Browse Element(s) Details


Os.8306.1.S1_at

Description gb:AK070478.1
DB_XREF= gi:32980502
TID=Os.8306.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054E20, full insert sequence.
FL= gb:AK070478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3304011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33000OsAffx.27130.1.S1_at11/115+19257694..19262043zinc finger family protein, putative, expressed
LOC_Os05g33020Os.37864.1.A1_at11/115+19263013..19270242secY family protein, putative, expressed
LOC_Os05g33010Os.11972.1.S1_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33010Os.11972.1.S1_s_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_s_at11/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_at9/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.24220.1.A1_at1/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33040Os.8306.1.S1_at11/115+19280554..19282706Cyclin, N-terminal domain containing protein, expressed
LOC_Os05g33050OsAffx.4503.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33050Os.7606.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33060OsAffx.4504.1.S1_x_at11/115+19296765..19297268hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8306.1.S1_at--548--8971Chr05:19281027..19281051 (25 bp)
TGAACCGACTTGAGCTGGATTTGTT
LOC_Os05g33040
Os.8306.1.S1_at--1001--10251Chr05:19281008..19281032 (25 bp)
TTTGTTGTTCAATCTGGACTTCAGG
LOC_Os05g33040
Os.8306.1.S1_at--1--6732Chr01:4661718..4661737 (20 bp)
GTTCGGAAGCTACTGCTTGCAATTG
NONE
Os.8306.1.S1_at--705--131Chr05:19280902..19280926 (25 bp)
ATTCAACAAGTTCACGGCGTCAATA
LOC_Os05g33040
Os.8306.1.S1_at--995--10711Chr05:19280847..19280871 (25 bp)
TTGACGAGTCTTGCAAGAGCGAGCT
LOC_Os05g33040
Os.8306.1.S1_at--33--8871Chr05:19280823..19280847 (25 bp)
TGATGCGGTACAGCAGTCAGGCTCT
LOC_Os05g33040
Os.8306.1.S1_at--1075--1511Chr05:19280812..19280836 (25 bp)
AGCAGTCAGGCTCTCCAAGGATGTA
LOC_Os05g33040
Os.8306.1.S1_at--786--7991Chr05:19280794..19280818 (25 bp)
GGATGTAGCTGACCAACTTGATTTT
LOC_Os05g33040
Os.8306.1.S1_at--351--9871Chr05:19280770..19280794 (25 bp)
TACATCCTACATTTTTCACCAAGGG
LOC_Os05g33040
Os.8306.1.S1_at--960--6811Chr05:19280694..19280718 (25 bp)
GTTTAACTGTTCTGGAGCTTTTGGA
LOC_Os05g33040
Os.8306.1.S1_at--965--4851Chr05:19280678..19280702 (25 bp)
GCTTTTGGATGATAGGGCCCTTCTT
LOC_Os05g33040
Target Sequence 
TGAACCGACTTGAGCTGGATTTGTTGTTCAATCTGGACTTCAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGC
TTGCAATTGGAAAAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCNCTAAAGA
TTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGGATGTA
GCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCACTAGAAATTCTTTCAAGAGTAAACAATTG
TGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis