Browse Element(s) Details


Os.53103.1.S1_x_at

Description gb:AK070832.1
DB_XREF= gi:32980855
TID=Os.53103.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066C05, full insert sequence.
FL= gb:AK070832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3297011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32960Os.47742.1.S1_at11/115+19228251..19230454expressed protein
LOC_Os05g32970Os.52270.1.S1_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.49159.1.A1_x_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.53103.1.S1_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.53103.1.S1_x_at11/115+19244289..19248341expressed protein
LOC_Os05g32980NANA5+19250881..19251281hypothetical protein
LOC_Os05g32990NANA5+19253513..19254490hypothetical protein
LOC_Os05g33000OsAffx.27130.1.S1_at11/115+19257694..19262043zinc finger family protein, putative, expressed
LOC_Os05g33020Os.37864.1.A1_at11/115+19263013..19270242secY family protein, putative, expressed
LOC_Os05g33010Os.11972.1.S1_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33010Os.11972.1.S1_s_at11/115+19270410..19274754DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53103.1.S1_x_at--755--3211Chr05:19244874..19244898 (25 bp)
CAAGGGCAACGTGCACAAGGCGGTA
LOC_Os05g32970
Os.53103.1.S1_x_at--938--8391Chr05:19244838..19244862 (25 bp)
GGCGCCGGCGAAGAAACAATCCTCT
LOC_Os05g32970
Os.53103.1.S1_x_at--46--2411Chr05:19244782..19244806 (25 bp)
AAACAGGCACAACTAACTCCAATTG
LOC_Os05g32970
Os.53103.1.S1_x_at--1003--2531Chr05:19244772..19244796 (25 bp)
AACTAACTCCAATTGCAGTGCTGAA
LOC_Os05g32970
Os.53103.1.S1_x_at--308--5031Chr05:19244758..19244782 (25 bp)
GCAGTGCTGAATTGTCAGTGGAATT
LOC_Os05g32970
Os.53103.1.S1_x_at--855--251Chr05:19244597..19244621 (25 bp)
ATATGCGCTAAATAACCAGTTGCTC
LOC_Os05g32970
Os.53103.1.S1_x_at--570--4811Chr05:19244591..19244615 (25 bp)
GCTAAATAACCAGTTGCTCCCACGG
LOC_Os05g32970
Os.53103.1.S1_x_at--850--9091Chr05:19244577..19244601 (25 bp)
TGCTCCCACGGCCAACGTGTGATGG
LOC_Os05g32970
Os.53103.1.S1_x_at--237--1951Chr05:19244570..19244594 (25 bp)
ACGGCCAACGTGTGATGGGAGCAAC
LOC_Os05g32970
Os.53103.1.S1_x_at--912--1811Chr05:19244533..19244557 (25 bp)
ACGCCACCAGCAAGTTACTGCTAGG
LOC_Os05g32970
Os.53103.1.S1_x_at--82--4271Chr05:19244527..19244551 (25 bp)
CCAGCAAGTTACTGCTAGGGTTGCT
LOC_Os05g32970
Target Sequence 
CAAGGGCAACGTGCACAAGGCGGTACGGGGCCAAGCGGCGCCGGCGAAGAAACAATCCTCTCAAAAATGAAGAAAAAAAA
GAAAGAGAAAAAAAACAGGCACAACTAACTCCAATTGCAGTGCTGAATTGTCAGTGGAATTAATTAAATTAATTATGTAC
TATACATAAATATGTATATATATATATACATATATATATATATATATACATATATATATACATATATATACATATATATA
TATACATATATATACATATATATATATATATATATATATATGCGCTAAATAACCAGTTGCTCCCACGGCCAACGTGTGAT
GGGAGCAACGGGGGCACCACCACGCCACCAGCAAGTTACTGCTAGGGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53103.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis