Browse Element(s) Details


Os.47742.1.S1_at

Description gb:AK069649.1
DB_XREF= gi:32979673
TID=Os.47742.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030B11, full insert sequence.
FL= gb:AK100181.1 gb:AK069649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3296011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32920OsAffx.940.1.S1_x_at1/115+19203336..19207525hypothetical protein
LOC_Os05g32930NANA5+19208874..19211316hypothetical protein
LOC_Os05g32940Os.26886.1.S1_x_at3/115+19211714..19212821transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g32950Os.26886.1.S1_x_at4/115+19213521..19216732transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g32950Os.26886.3.S1_x_at2/115+19213521..19216732transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g32960Os.47742.1.S1_at11/115+19228251..19230454expressed protein
LOC_Os05g32970Os.52270.1.S1_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.49159.1.A1_x_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.53103.1.S1_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.53103.1.S1_x_at11/115+19244289..19248341expressed protein
LOC_Os05g32980NANA5+19250881..19251281hypothetical protein
LOC_Os05g32990NANA5+19253513..19254490hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47742.1.S1_at--653--5611Chr05:19228733..19228757 (25 bp)
GACAACTTCGATATGACCTTCCCAT
LOC_Os05g32960
Os.47742.1.S1_at--987--3631Chr05:19228716..19228740 (25 bp)
CTTCCCATGGCACTATGACAATCGT
LOC_Os05g32960
Os.47742.1.S1_at--831--6251Chr05:19228685..19228709 (25 bp)
GATGGTGTTCACTATGGGCGTGCAC
LOC_Os05g32960
Os.47742.1.S1_at--77--4011Chr05:19228667..19228691 (25 bp)
CGTGCACCGGCGAAGTTGTTATGGC
LOC_Os05g32960
Os.47742.1.S1_at--424--3191Chr05:19228635..19228659 (25 bp)
CAAGGTCGGGCACCAGTATTTCGTG
LOC_Os05g32960
Os.47742.1.S1_at--1101--1191Chr05:19228621..19228645 (25 bp)
AGTATTTCGTGGACCTCATGCTGGG
LOC_Os05g32960
Os.47742.1.S1_at--12--791Chr05:19228594..19228618 (25 bp)
ATGTGCTCCTCAATGCCATCTGCAA
LOC_Os05g32960
Os.47742.1.S1_at--616--631Chr05:19228548..19228572 (25 bp)
ATGCTCAGTAAGTTTGTGCGGCTCA
LOC_Os05g32960
Os.47742.1.S1_at--868--9131Chr05:19228532..19228556 (25 bp)
TGCGGCTCAATCGTGTACACTAGAG
LOC_Os05g32960
Os.47742.1.S1_at--336--8851Chr05:19228379..19228403 (25 bp)
TGATCTTTCGGCTATGTTGTTGGTT
LOC_Os05g32960
Os.47742.1.S1_at--757--4071Chr05:19228326..19228350 (25 bp)
CGAGTTCGATCGGAGCTAGCTATGA
LOC_Os05g32960
Target Sequence 
GACAACTTCGATATGACCTTCCCATGGCACTATGACAATCGTTGCAATGATGGTGTTCACTATGGGCGTGCACCGGCGAA
GTTGTTATGGCGGGATGGCAAGGTCGGGCACCAGTATTTCGTGGACCTCATGCTGGGGCATGTGCTCCTCAATGCCATCT
GCAATGGATGAAGGTTCTTGCTTCCATGCTCAGTAAGTTTGTGCGGCTCAATCGTGTACACTAGAGTAGGATCCTCAGGG
AATTGAATTTGCTTAGATGAAATTACTGGCATTGAATCAATTCCAGTTCCTGATATCATGTGTACATCGGATATGGGGGT
GGGGCCNTAGCTGAAGCATGTATAGTGNGACATCTGATCTTTCGGCTATGTTGTTGGTTGGGATTTACTCTAGTGGGCGA
GGAAGATCGAGTTCGATCGGAGCTAGCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis