Browse Element(s) Details


Os.54825.1.S1_at

Description gb:AK106842.1
DB_XREF= gi:32992051
TID=Os.54825.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-H07, full insert sequence.
FL= gb:AK106842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3308011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33050OsAffx.4503.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33050Os.7606.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33060OsAffx.4504.1.S1_x_at11/115+19296765..19297268hypothetical protein
LOC_Os05g33070NANA5+19311615..19312267hypothetical protein
LOC_Os05g33080Os.54825.1.S1_at11/115+19315766..19320371Protein kinase domain containing protein, expressed
LOC_Os05g33090OsAffx.4505.1.S1_at11/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_at7/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_x_at5/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.23061.1.S2_at2/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.32257.1.A1_at1/115+19322162..19323654hypothetical protein
LOC_Os05g33100Os.7671.1.S1_at11/115+19326441..19330448Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33110Os.6223.1.S1_at11/115+19332246..19340091Dienelactone hydrolase family protein, expressed
LOC_Os05g33120Os.51693.1.S1_at11/115+19335050..19337712retrotransposon protein, putative, unclassified, expressed
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54825.1.S1_at--212--7791Chr05:19319904..19319928 (25 bp)
GGTGCCCTGGAAACGCGATGCGTCA
LOC_Os05g33080
Os.54825.1.S1_at--536--611Chr05:19319921..19319945 (25 bp)
ATGCGTCATGCACGGCTTGGATTGA
LOC_Os05g33080
Os.54825.1.S1_at--834--6551Chr05:19319944..19319968 (25 bp)
GATTAGCCATATGCATCTCGATCAG
LOC_Os05g33080
Os.54825.1.S1_at--774--631Chr05:19319982..19320006 (25 bp)
ATGCTAGCTCCTATGTATTACTACG
LOC_Os05g33080
Os.54825.1.S1_at--516--10211Chr05:19319997..19320021 (25 bp)
TATTACTACGTCTCGATCGTCGATC
LOC_Os05g33080
Os.54825.1.S1_at--494--4051Chr05:19320017..19320041 (25 bp)
CGATCGCTTGCTTGGAGTACTTTGA
LOC_Os05g33080
Os.54825.1.S1_at--635--10811Chr05:19320078..19320102 (25 bp)
TTGTCAAGCTGCTCGATCGGAGGGA
LOC_Os05g33080
Os.54825.1.S1_at--763--1971Chr05:19320116..19320140 (25 bp)
ACTCCCAGCTGTGTATAGAACGGTA
LOC_Os05g33080
Os.54825.1.S1_at--14--6971Chr05:19320213..19320237 (25 bp)
GTAGCAGTACATCATCACGTGCGTA
LOC_Os05g33080
Os.54825.1.S1_at--688--8131Chr05:19320257..19320281 (25 bp)
GGACAGTTGTACGACGATTCCTTGT
LOC_Os05g33080
Os.54825.1.S1_at--999--5751Chr05:19320269..19320293 (25 bp)
GACGATTCCTTGTTCTTTTGTACGA
LOC_Os05g33080
Target Sequence 
GGTGCCCTGGAAACGCGATGCGTCATGCACGGCTTGGATTGATTAGCCATATGCATCTCGATCAGCTGCAGATATATAAT
GCTAGCTCCTATGTATTACTACGTCTCGATCGTCGATCGCTTGCTTGGAGTACTTTGAGCCAGGCAGATGGGGAAGAAGA
GATGGATGGTCAGCTTGTCAAGCTGCTCGATCGGAGGGAGATTGCTGGCACTACTCCCAGCTGTGTATAGAACGGTACCA
GTACCACTTCACCAAGCTCATCACGGCTTGCTTGCNAGACATCCTTGCAAATGCAATTGCAGATTTGCTGTAGCAGTACA
TCATCACGTGCGTACGATTGTACTATTTATTAGGGACAGTTGTACGACGATTCCTTGTTCTTTTGTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis