Browse Element(s) Details


OsAffx.32257.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32257.1
CNT=1
FEA=DNA_38
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF185 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g330901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33060OsAffx.4504.1.S1_x_at11/115+19296765..19297268hypothetical protein
LOC_Os05g33070NANA5+19311615..19312267hypothetical protein
LOC_Os05g33080Os.54825.1.S1_at11/115+19315766..19320371Protein kinase domain containing protein, expressed
LOC_Os05g33090OsAffx.4505.1.S1_at11/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_at7/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_x_at5/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.23061.1.S2_at2/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.32257.1.A1_at1/115+19322162..19323654hypothetical protein
LOC_Os05g33100Os.7671.1.S1_at11/115+19326441..19330448Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33110Os.6223.1.S1_at11/115+19332246..19340091Dienelactone hydrolase family protein, expressed
LOC_Os05g33120Os.51693.1.S1_at11/115+19335050..19337712retrotransposon protein, putative, unclassified, expressed
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32257.1.A1_at--267--1676Chr06:23583534..23583558 (25 bp)
AGCCAATTCGGCAGCTTTTTGTTCA
NONE
OsAffx.32257.1.A1_at--859--3677Chr06:23583548..23583572 (25 bp)
CTTTTTGTTCAATTTCTCGTGGAGT
NONE
OsAffx.32257.1.A1_at--269--3913Chr10:10533848..10533872 (25 bp)
CTGGCCCCGGATTTCCATATAAAGG
NONE
OsAffx.32257.1.A1_at--457--5531NONE
GAAAGACGCGACGTTTTATTCCAGG
NONE
OsAffx.32257.1.A1_at--517--5534Chr06:23583743..23583767 (25 bp)
GAAAAATGCACACTACTCCCTCTTT
NONE
OsAffx.32257.1.A1_at--431--9296Chr06:23583759..23583783 (25 bp)
TCCCTCTTTTCTATCGAATCGGTCA
NONE
OsAffx.32257.1.A1_at--587--5256Chr06:23583774..23583798 (25 bp)
GAATCGGTCATAACCACTGCCTACA
NONE
OsAffx.32257.1.A1_at--364--1134Chr06:23583810..23583834 (25 bp)
AGTGCACCACAAGTAAGCGCTAATG
NONE
OsAffx.32257.1.A1_at--447--3117Chr06:23583835..23583859 (25 bp)
AATAGGCCTGCGATTCCGTAGAAAG
NONE
OsAffx.32257.1.A1_at--439--2753Chr02:14259167..14259191 (25 bp)
AAGATAACTGGAAGCCCCAACCGCT
NONE
OsAffx.32257.1.A1_at--766--2615Chr06:23583945..23583969 (25 bp)
AACCGCTAAGAATCCTAGTGAACCT
NONE
Target Sequence 
AGCCAATTCGGCAGCTTTTTGTTCAATTTCTCGTGGAGTAAAAAACTTCTCATCAGTACGAGTCAAGGGAATGGCCCCCT
GGCCCCGGATTTCCATATAAAGGATACGACGAGGAAAAAGACCTTCTTTAACCTGAATTCTAATTGATTGGATATCCCGC
ATAAGGAATCGAAGAAAGACGCGACGTTTTATTCCAGGGAATCCCCAACGAAAAATGCACACTACTCCCTCTTTTCTATC
GAATCGGTCATAACCACTGCCTACATTCCACAAAATAGTGCACCACAAGTAAGCGCTAATGAATAGGCCTGCGATTCCGT
AGAAAGACATCACGACCCCCTGTGGAAAAAAAAGAATTTGTTGAGATGGAAGTACAGATATAATATTCTTACCAAGATAA
CTGGAAGCCCCAACCGCTAAGAATCCTAGTGAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32257.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis