Browse Element(s) Details


OsAffx.4505.1.S1_at

Description tigr:9633.m03040
TID=OsAffx.4505.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3309011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33060OsAffx.4504.1.S1_x_at11/115+19296765..19297268hypothetical protein
LOC_Os05g33070NANA5+19311615..19312267hypothetical protein
LOC_Os05g33080Os.54825.1.S1_at11/115+19315766..19320371Protein kinase domain containing protein, expressed
LOC_Os05g33090OsAffx.4505.1.S1_at11/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_at7/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_x_at5/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.23061.1.S2_at2/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.32257.1.A1_at1/115+19322162..19323654hypothetical protein
LOC_Os05g33100Os.7671.1.S1_at11/115+19326441..19330448Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33110Os.6223.1.S1_at11/115+19332246..19340091Dienelactone hydrolase family protein, expressed
LOC_Os05g33120Os.51693.1.S1_at11/115+19335050..19337712retrotransposon protein, putative, unclassified, expressed
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4505.1.S1_at--615--10631Chr05:19322257..19322281 (25 bp)
TTCCCTAAAAATCGGTGCTGTTTTG
LOC_Os05g33090
OsAffx.4505.1.S1_at--130--3371Chr05:19322350..19322374 (25 bp)
CACCTCCCGGGCATATATAAAGCTT
LOC_Os05g33090
OsAffx.4505.1.S1_at--244--351Chr05:19322366..19322390 (25 bp)
ATAAAGCTTCATCATGCTCCACTCT
LOC_Os05g33090
OsAffx.4505.1.S1_at--828--411Chr05:19322376..19322400 (25 bp)
ATCATGCTCCACTCTCTAGAGGGAG
LOC_Os05g33090
OsAffx.4505.1.S1_at--145--4191Chr05:19322763..19322787 (25 bp)
CCCCGGATAGGTTCTGGCTGGTTAG
LOC_Os05g33090
OsAffx.4505.1.S1_at--723--4513Chr12:20625690..20625714 (25 bp)
GCTAGGCTTCTTCTTTCCCGAAGGA
NONE
OsAffx.4505.1.S1_at--619--10531Chr05:19323061..19323085 (25 bp)
TTCTTTCCCGAAGGAACTCTCAGGA
LOC_Os05g33090
OsAffx.4505.1.S1_at--661--8171Chr05:19323073..19323097 (25 bp)
GGAACTCTCAGGAATGTCCGATTAA
LOC_Os05g33090
OsAffx.4505.1.S1_at--482--5272Chr12:20625723..20625747 (25 bp)
GAATGTCCGATTAACCGCTGCTTAG
NONE
OsAffx.4505.1.S1_at--826--2611Chr05:19323096..19323523 (25 bp)
AACCGCTGCTTAGTGATTGGTCACT
LOC_Os05g33090
OsAffx.4505.1.S1_at--113--9371Chr05:19323545..19323569 (25 bp)
TCGAGCATGGATGGACCGTAAGATA
LOC_Os05g33090
Target Sequence 
TTCCCTAAAAATCGGTGCTGTTTTGACCCCCACCATGAGCCCACGTCTACACCCCACTCCACCGGCCATTGCCGCCCTTC
TCCGAACTCCTCGCACCTCCCGGGCATATATAAAGCTTCATCATGCTCCACTCTCTAGAGGGAGTAAAAAACTTCTCATC
AGTACGAGTCAAGGGAATGGCCCCCTGGCCCCGGATAGGTTCTGGCTGGTTAGAGCAGAGGACTCGAAATCCTCTTTAGC
TTTGCGCGTTGGACGGGCTAGGCTTCTTCTTTCCCGAAGGAACTCTCAGGAATGTCCGATTAACCGCTGCTTAGTGATTG
GTCACTTTGTCAAGATCTTCCCTGGGGTCGAGCATGGATGGACCGTAAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis