Browse Element(s) Details


Os.7671.1.S1_at

Description gb:AK060876.1
DB_XREF= gi:32970894
TID=Os.7671.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A04, full insert sequence.
FL= gb:AK073623.1 gb:AK060876.1 gb:AK101551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3310011/11Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33070NANA5+19311615..19312267hypothetical protein
LOC_Os05g33080Os.54825.1.S1_at11/115+19315766..19320371Protein kinase domain containing protein, expressed
LOC_Os05g33090OsAffx.4505.1.S1_at11/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_at7/115+19322162..19323654hypothetical protein
LOC_Os05g33090Os.26748.1.S1_x_at5/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.23061.1.S2_at2/115+19322162..19323654hypothetical protein
LOC_Os05g33090OsAffx.32257.1.A1_at1/115+19322162..19323654hypothetical protein
LOC_Os05g33100Os.7671.1.S1_at11/115+19326441..19330448Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33110Os.6223.1.S1_at11/115+19332246..19340091Dienelactone hydrolase family protein, expressed
LOC_Os05g33120Os.51693.1.S1_at11/115+19335050..19337712retrotransposon protein, putative, unclassified, expressed
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed
LOC_Os05g33140Os.47564.1.S1_at4/115+19352215..19353581Basic endochitinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7671.1.S1_at--243--10071Chr05:19329128..19329152 (25 bp)
TAGTGAAAGCTCATGAGATCCAGGC
LOC_Os05g33100
Os.7671.1.S1_at--383--6371Chr05:19329144..19329168 (25 bp)
GATCCAGGCTGCTGTGATGTGTCAC
LOC_Os05g33100
Os.7671.1.S1_at--544--771Chr05:19329160..19329184 (25 bp)
ATGTGTCACCCCTCTTTTGTGACTG
LOC_Os05g33100
Os.7671.1.S1_at--337--5571Chr05:19329294..19329315 (22 bp)
GAAAGAGGTCAAATGCCCAATTGCT
LOC_Os05g33100
Os.7671.1.S1_at--247--8971Chr05:19329327..19329351 (25 bp)
TGAAATTGATCGTATGTCCCCACCA
LOC_Os05g33100
Os.7671.1.S1_at--728--9391Chr05:19329336..19329360 (25 bp)
TCGTATGTCCCCACCAGAAGTGGTG
LOC_Os05g33100
Os.7671.1.S1_at--841--10631Chr05:19329367..19329391 (25 bp)
TTCGAGCAGGTTCTTTCTTCAAAGT
LOC_Os05g33100
Os.7671.1.S1_at--857--7891Chr05:19329375..19329396 (22 bp)
GGTTCTTTCTTCAAAGTCAGGGATT
LOC_Os05g33100
Os.7671.1.S1_at--261--6871Chr05:19330281..19330305 (25 bp)
GTTTGTGCTAGTAGTGTATATGCTT
LOC_Os05g33100
Os.7671.1.S1_at--992--10231Chr05:19330386..19330410 (25 bp)
TTTGGTGGTCACGACTGACGAGAAC
LOC_Os05g33100
Os.7671.1.S1_at--740--1851Chr05:19330396..19330420 (25 bp)
ACGACTGACGAGAACATATCATTTT
LOC_Os05g33100
Target Sequence 
TAGTGAAAGCTCATGAGATCCAGGCTGCTGTGATGTGTCACCCCTCTTTTGTGACTGTTGATGATATGAAAGAGGTCAAA
TGCCCAATTGCTATACTTGGAGCTGAAATTGATCGTATGTCCCCACCAGAAGTGGTGAAGCANTTCGAGCAGGTTCTTTC
TTCAAAGTCAGGGATTGGNCACTTTGTCAAGATCTTCCCTGGGGTTGANCATGGATGGACTGTGAGATACAAGAATGATG
ATGCAGCTGCTGTCAAGAGCGCCGAGGAAGCCCTGGCGGACATGATTGACTGGTTTAATAAGAACCTGAAGTGAATTTGA
CATATCCGCTGTCCACGATCGGTTTGTGTATTGCTCATGTTTCATCGCAAGCATCCTGAATTTACGGTTGAGTAGCCTTC
CCANTNTGTTTGTGCTAGTAGTGTATATGCTTTGCTTGTGTTNGGAATTTGCTTTGTGTCNNCCTGAACTTCCACTTCTG
TAATAAAAATGNATGGGCGAGCATNTTCTCGGTTTGGTGGTCACGACTGACGAGAACATATCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis