Browse Element(s) Details


Os.47564.1.S1_at

Description gb:L37289.1
DB_XREF= gi:561872
TID=Os.47564.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47564 (NCBI UniGene Cluster)
DEF=Oryza sativa chitinase mRNA, complete cds.
PROD=chitinase
FL= gb:L37289.1 gb:L40337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g331404/11Basic endochitinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33100Os.7671.1.S1_at11/115+19326441..19330448Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33110Os.6223.1.S1_at11/115+19332246..19340091Dienelactone hydrolase family protein, expressed
LOC_Os05g33120Os.51693.1.S1_at11/115+19335050..19337712retrotransposon protein, putative, unclassified, expressed
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed
LOC_Os05g33140Os.47564.1.S1_at4/115+19352215..19353581Basic endochitinase 1 precursor, putative, expressed
LOC_Os05g33150Os.4976.1.S1_at8/115+19362755..1936434526 kDa endochitinase 1 precursor, putative, expressed
LOC_Os05g33160OsAffx.27132.1.S1_at11/115+19365823..19366590Leucine Rich Repeat family protein
LOC_Os05g33170OsAffx.27133.1.S1_at11/115+19369452..19370633hypothetical protein
LOC_Os05g33180NANA5+19372956..19373764hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47564.1.S1_at--1033--4671NONE
GCGGTGCAGTGAACAGCTAGCCTCG
NONE
Os.47564.1.S1_at--80--8351NONE
GGCGGCGACCGGCTATAAAATAAGA
NONE
Os.47564.1.S1_at--680--351Chr05:19353394..19353418 (25 bp)
ATAAGAGTGCTTTGCCACTCACTCC
LOC_Os05g33140
Os.47564.1.S1_at--415--1911NONE
ACGTGTCGTCGTACACAGTACGTGT
NONE
Os.47564.1.S1_at--499--2191NONE
ACAACGTACTAGTATTGAGTCGAAG
NONE
Os.47564.1.S1_at--314--7231NONE
GTCGAAGTATATATGGTGTGTCAGT
NONE
Os.47564.1.S1_at--533--7451NONE
GTGTCAGTGTGTGCCATAAACTTGT
NONE
Os.47564.1.S1_at--791--8651NONE
TGTGTGCCATAAACTTGTAACCGGG
NONE
Os.47564.1.S1_at--1060--10311Chr05:19353491..19353515 (25 bp)
TTGTAACCGGGCTGAAACCGATATA
LOC_Os05g33140
Os.47564.1.S1_at--467--2371Chr05:19353505..19353529 (25 bp)
AAACCGATATATATGCATGTGGCAC
LOC_Os05g33140
Os.47564.1.S1_at--97--8251Chr05:19353525..19353549 (25 bp)
GGCACAGTGTCAGTCCAATATTTCA
LOC_Os05g33140
Target Sequence 
GCGGTGCAGTGAACAGCTAGCCTCGCCGGCGGCGACCGGCTATAAAATAAGAGTGCTTTGCCACTCACTCCTNTACGTGT
CGTCGTACACAGTACGTGTACTTACAACGTACTAGTATTGAGTCGAAGTATATATGGTGTGTCAGTGTGTGCCATAAACT
TGTAACCGGGCTGAAACCGATATATATGCATGTGGCACAGTGTCAGTCCAATATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis