Browse Element(s) Details


OsAffx.27133.1.S1_at

Description tigr:9633.m03048
TID=OsAffx.27133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to nucleosomechromatin assembly factor 104
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3317011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed
LOC_Os05g33140Os.47564.1.S1_at4/115+19352215..19353581Basic endochitinase 1 precursor, putative, expressed
LOC_Os05g33150Os.4976.1.S1_at8/115+19362755..1936434526 kDa endochitinase 1 precursor, putative, expressed
LOC_Os05g33160OsAffx.27132.1.S1_at11/115+19365823..19366590Leucine Rich Repeat family protein
LOC_Os05g33170OsAffx.27133.1.S1_at11/115+19369452..19370633hypothetical protein
LOC_Os05g33180NANA5+19372956..19373764hypothetical protein
LOC_Os05g33190Os.23511.1.S1_at10/115+19381990..19384745Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33200OsAffx.27135.1.S1_at11/115+19387083..19389968Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33210OsAffx.27136.1.S1_at11/115+19393642..19395101Ubiquinol-cytochrome c reductase complex 8.0 kDa protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27133.1.S1_at--1103--8011Chr05:19370118..19370142 (25 bp)
GGAGGAGCACCAGAGCTAGAAAAAG
LOC_Os05g33170
OsAffx.27133.1.S1_at--830--5651Chr05:19370106..19370130 (25 bp)
GAGCTAGAAAAAGAACGCGCCGGTG
LOC_Os05g33170
OsAffx.27133.1.S1_at--426--9731Chr05:19370053..19370077 (25 bp)
TCAAGTGGCCGTAGCTCACCGTCTA
LOC_Os05g33170
OsAffx.27133.1.S1_at--1080--2851Chr05:19370051..19370075 (25 bp)
AAGTGGCCGTAGCTCACCGTCTAGT
LOC_Os05g33170
OsAffx.27133.1.S1_at--50--4771Chr05:19369801..19369825 (25 bp)
GCTGCATGCCGCAAAGGCGGTACAT
LOC_Os05g33170
OsAffx.27133.1.S1_at--729--4211Chr05:19369793..19369817 (25 bp)
CCGCAAAGGCGGTACATGGTGGCTA
LOC_Os05g33170
OsAffx.27133.1.S1_at--493--3291Chr05:19369790..19369814 (25 bp)
CAAAGGCGGTACATGGTGGCTACCA
LOC_Os05g33170
OsAffx.27133.1.S1_at--355--2951Chr05:19369788..19369812 (25 bp)
AAGGCGGTACATGGTGGCTACCAAG
LOC_Os05g33170
OsAffx.27133.1.S1_at--772--4711Chr05:19369665..19369689 (25 bp)
GCTGGCACCAGCTCAGAGTACGGCG
LOC_Os05g33170
OsAffx.27133.1.S1_at--1149--5071Chr05:19369661..19369685 (25 bp)
GCACCAGCTCAGAGTACGGCGCCGT
LOC_Os05g33170
OsAffx.27133.1.S1_at--1077--1711Chr05:19369659..19369683 (25 bp)
ACCAGCTCAGAGTACGGCGCCGTTC
LOC_Os05g33170
Target Sequence 
GGAGGAGCACCAGAGCTAGAAAAAGAACGCGCCGGTGCTCTACGACCTCGTCATCTCCCAGCCGCTCAAGTGGCCGTAGC
TCACCGTCTAGTGGCTCCCCTCCCACTCCCGGGCGAGGTCAACCGTGCCCGCTGCATGCCGCAAAGGCGGTACATGGTGG
CTACCAAGACCTGTGTGGATGAGGTGCATGTGTACCATCTTGGCGACGACGGCGAGAAGTGCGGCGCCGATGTGGTGCTC
AGGGGGCATGAAGCGGAGGGGTATGGGCTGGCACCAGCTCAGAGTACGGCGCCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis