Browse Element(s) Details


OsAffx.27132.1.S1_at

Description tigr:9633.m03047
TID=OsAffx.27132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3316011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed
LOC_Os05g33140Os.47564.1.S1_at4/115+19352215..19353581Basic endochitinase 1 precursor, putative, expressed
LOC_Os05g33150Os.4976.1.S1_at8/115+19362755..1936434526 kDa endochitinase 1 precursor, putative, expressed
LOC_Os05g33160OsAffx.27132.1.S1_at11/115+19365823..19366590Leucine Rich Repeat family protein
LOC_Os05g33170OsAffx.27133.1.S1_at11/115+19369452..19370633hypothetical protein
LOC_Os05g33180NANA5+19372956..19373764hypothetical protein
LOC_Os05g33190Os.23511.1.S1_at10/115+19381990..19384745Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33200OsAffx.27135.1.S1_at11/115+19387083..19389968Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27132.1.S1_at--1089--191Chr05:19366383..19366407 (25 bp)
ATTTGCGAGCTCTCGGGAGTTTCGT
LOC_Os05g33160
OsAffx.27132.1.S1_at--323--8011Chr05:19366368..19366392 (25 bp)
GGAGTTTCGTGCTGGAACCCCGACG
LOC_Os05g33160
OsAffx.27132.1.S1_at--853--5771Chr05:19366347..19366371 (25 bp)
GACGAGTCTCGCATCATTGCTCTCT
LOC_Os05g33160
OsAffx.27132.1.S1_at--1161--1611Chr05:19366136..19366160 (25 bp)
AGCTGGCCAACTGCAAGTTCATCAA
LOC_Os05g33160
OsAffx.27132.1.S1_at--41--5391Chr05:19366105..19366129 (25 bp)
GAAGCTGTCGGCGAATTCCCTTTCG
LOC_Os05g33160
OsAffx.27132.1.S1_at--753--10591Chr05:19366061..19366085 (25 bp)
TTGTGCTCCTAGGTCACCTTAAGTC
LOC_Os05g33160
OsAffx.27132.1.S1_at--416--1731Chr05:19366046..19366070 (25 bp)
ACCTTAAGTCGCTAGACCTGTCTAA
LOC_Os05g33160
OsAffx.27132.1.S1_at--537--10031Chr05:19366034..19366058 (25 bp)
TAGACCTGTCTAACAACAACCTGGA
LOC_Os05g33160
OsAffx.27132.1.S1_at--652--9391Chr05:19365944..19365968 (25 bp)
TCGTCGAGCCACACTCCGGTTTTAA
LOC_Os05g33160
OsAffx.27132.1.S1_at--531--10491Chr05:19365923..19365947 (25 bp)
TTAACCTCGGTGTCCTCTTCGGAAG
LOC_Os05g33160
OsAffx.27132.1.S1_at--107--10631Chr05:19365873..19365897 (25 bp)
TTCGTCTTCGGTTTTGTTGGCACAC
LOC_Os05g33160
Target Sequence 
ATTTGCGAGCTCTCGGGAGTTTCGTGCTGGAACCCCGACGAGTCTCGCATCATTGCTCTCTCGCTCTCTGGCTTTGGCCT
CACCGGTGCTATCCCCTCTGAGCTCCAGTTCTGCTCCGCCATCACAACCCTCGACCTTTCCTCCAACCGGCTGGGGGGAC
AAATTCCTCCCGCACTGTGCGACTGGCTCCCTTTCGTCGTCAACCTCGACCTCTCCGGCAACCAGCTCTCCGGACCAATT
CCCGCAGAGCTGGCCAACTGCAAGTTCATCAACTCGCTGAAGCTGTCGGCGAATTCCCTTTCGGGAAAAATCCCCGCCTC
CCTTGTGCTCCTAGGTCACCTTAAGTCGCTAGACCTGTCTAACAACAACCTGGACGGCGATATCCCGCCTAAGCTAGCGG
CCTCTTTCTCCGCGGACGCCTTCGCCGATAACCCCGATCTCGTCGAGCCACACTCCGGTTTTAACCTCGGTGTCCTCTTC
GGAAGGCCGGAGGCTGCAGCCGCCATTGCCTTCGTCTTCGGTTTTGTTGGCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis