Browse Element(s) Details


Os.4976.1.S1_at

Description gb:AB012855.1
DB_XREF= gi:3061268
TID=Os.4976.1
CNT=68
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.4976 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for chitinase, complete cds.
PROD=chitinase
FL= gb:AB018248.1 gb:AK071196.1 gb:AB096139.1 gb:AB012855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g331508/1126 kDa endochitinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33110Os.6223.1.S1_at11/115+19332246..19340091Dienelactone hydrolase family protein, expressed
LOC_Os05g33130Os.36593.2.S1_x_at1/115+19343286..19344731Basic endochitinase A precursor, putative, expressed
LOC_Os05g33140Os.47564.1.S1_at4/115+19352215..19353581Basic endochitinase 1 precursor, putative, expressed
LOC_Os05g33150Os.4976.1.S1_at8/115+19362755..1936434526 kDa endochitinase 1 precursor, putative, expressed
LOC_Os05g33160OsAffx.27132.1.S1_at11/115+19365823..19366590Leucine Rich Repeat family protein
LOC_Os05g33170OsAffx.27133.1.S1_at11/115+19369452..19370633hypothetical protein
LOC_Os05g33180NANA5+19372956..19373764hypothetical protein
LOC_Os05g33190Os.23511.1.S1_at10/115+19381990..19384745Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33200OsAffx.27135.1.S1_at11/115+19387083..19389968Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4976.1.S1_at--1000--1091Chr05:19363906..19363930 (25 bp)
AGTGGACTCCGACTCCCGCGGACAG
LOC_Os05g33150
Os.4976.1.S1_at--347--3491Chr05:19363948..19363972 (25 bp)
CAGGCTACGGGCTCACCACGAACAT
LOC_Os05g33150
Os.4976.1.S1_at--598--4151Chr05:19364012..19364036 (25 bp)
CGCCGACCGGGTCGCGTTCTACAAG
LOC_Os05g33150
Os.4976.1.S1_at--14--9731Chr05:19364064..19364088 (25 bp)
TACGGGCCCAACCTGGACTGCTTCG
LOC_Os05g33150
Os.4976.1.S1_at--577--7471Chr05:19364184..19364208 (25 bp)
GTGTGAGTACGCACTTCGCACGGTC
LOC_Os05g33150
Os.4976.1.S1_at--114--3351Chr05:19364202..19364226 (25 bp)
CACGGTCGCTCTGCAGCCAGAGTGA
LOC_Os05g33150
Os.4976.1.S1_at--386--10191NONE
TATATGTATTTTTCGGTTTCGGGCG
NONE
Os.4976.1.S1_at--112--7851NONE
GGTTTCGGGCGAGGAAATTCTTCAT
NONE
Os.4976.1.S1_at--262--6191NONE
GAGGAAATTCTTCATGGATCTGTGA
NONE
Os.4976.1.S1_at--471--7971Chr05:19364275..19364299 (25 bp)
GGATCTGTGAAAGCCCATATGTATG
LOC_Os05g33150
Os.4976.1.S1_at--347--4331Chr05:19364289..19364313 (25 bp)
CCATATGTATGCATGGTCATGGCAT
LOC_Os05g33150
Target Sequence 
AGTGGACTCCGACTCCCGCGGACAGCGCGGCCGGCCGCGCGCCAGGCTACGGGCTCACCACGAACATCCTCACCGGCGGG
CTCCAGTGCGCCGGCGGCAACGGCGGCGCCGACCGGGTCGCGTTCTACAAGCGCTACTGCGACGTGCTCGGCGTCGGCTA
CGGGCCCAACCTGGACTGCTTCGGCCAGGCGCCGTTCGACGGCGACATCATGTCGGCGTCTGCGGCGAAGTAGACGTGTG
CGCCGCCGTGCCGGCCCCGATCGATCGAATAAAATTGCGTGTGAGTACGCACTTCGCACGGTCGCTCTGCAGCCAGAGTG
AGTGAGTTTGCTNTATATGTATTTTTCGGTTTCGGGCGAGGAAATTCTTCATGGATCTGTGAAAGCCCATATGTATGCAT
GGTCATGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis