Browse Element(s) Details


Os.32450.1.S1_at

Description gb:AK104768.1
DB_XREF= gi:32989977
TID=Os.32450.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A03, full insert sequence.
FL= gb:AK061569.1 gb:AK099479.1 gb:AK104768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0637010/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06320OsAffx.24127.1.S1_at10/112+3158637..3160600RNA recognition motif 2 family protein
LOC_Os02g06330OsAffx.24128.1.S1_s_at11/112+3163942..3165032AP2 domain containing protein, expressed
LOC_Os02g06340Os.24778.1.S1_at11/112+3166615..3170814EH-domain containing protein 1, putative, expressed
LOC_Os02g06350OsAffx.18139.2.S1_at10/112+3171932..3174989hypothetical protein
LOC_Os02g06350Os.55379.1.S1_x_at1/112+3171932..3174989hypothetical protein
LOC_Os02g06360Os.7064.1.S1_s_at11/112+3179627..3182762KpsF/GutQ family protein, expressed
LOC_Os02g06370Os.32450.1.S1_at10/112+3182870..3187022DNA-binding protein, putative, expressed
LOC_Os02g06380OsAffx.24129.1.S1_at10/112+3188102..3190109uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os02g06390Os.5009.1.S1_at10/112+3191320..3194131expressed protein
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32450.1.S1_at--305--6071Chr02:3184049..3184073 (25 bp)
GAGTTTACAGTTATGCGCACAGCAT
LOC_Os02g06370
Os.32450.1.S1_at--289--1551NONE
AGCATTGAGTTTCGCATTGCCGCAC
NONE
Os.32450.1.S1_at--1043--71Chr02:3183403..3183427 (25 bp)
ATTGCCGCACATCTTGGGCTGGGAC
LOC_Os02g06370
Os.32450.1.S1_at--1139--3891Chr02:3183385..3183409 (25 bp)
CTGGGACCAGGCCTTGACTAATCAC
LOC_Os02g06370
Os.32450.1.S1_at--703--2311Chr02:3183296..3183320 (25 bp)
AAAGGTGAAGCTCCCTTGTAGGCAC
LOC_Os02g06370
Os.32450.1.S1_at--1142--7651Chr02:3183259..3183283 (25 bp)
GGGATTTGAACATCATCGCTACCAA
LOC_Os02g06370
Os.32450.1.S1_at--828--211Chr02:3183233..3183257 (25 bp)
ATTTGGATGCTGTTGCACTTTCTCC
LOC_Os02g06370
Os.32450.1.S1_at--1073--4971Chr02:3183114..3183138 (25 bp)
GCATGTTTGAACTTCACCAGGCCTA
LOC_Os02g06370
Os.32450.1.S1_at--631--10131Chr02:3183061..3183085 (25 bp)
TATGCATTGCGTTTGACACCTTGTG
LOC_Os02g06370
Os.32450.1.S1_at--799--1731Chr02:3183044..3183068 (25 bp)
ACCTTGTGCCTTTTGAATGTGTGAC
LOC_Os02g06370
Os.32450.1.S1_at--674--8291Chr02:3182918..3182942 (25 bp)
GGCTCAAACTTTTTATTCCACTGCA
LOC_Os02g06370
Target Sequence 
GAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGACTAATCACCA
GCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACACCCAGATTCAGAGTGGGAAAGGTGAAGCTCCCTTG
TAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGA
ATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTT
CAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTG
TGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTAT
GGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTCCACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis