Browse Element(s) Details


Os.12093.1.S1_at

Description gb:AK099852.1
DB_XREF= gi:32985061
TID=Os.12093.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110D09, full insert sequence.
FL= gb:AK099852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0924611/11glycine-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09230Os.10811.1.S1_at11/111+4646958..4648763expressed protein
LOC_Os01g09240OsAffx.9699.1.S1_at6/111+4659641..4661103retrotransposon protein, putative, LINE subclass
LOC_Os01g09246Os.12093.1.S1_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09246Os.12093.2.S1_x_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09252Os.42888.1.S1_at11/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09252Os.42888.2.S1_x_at10/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09260OsAffx.9698.1.S1_x_at11/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09260Os.56214.1.S1_at10/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12093.1.S1_at--444--8271Chr01:4681058..4681082 (25 bp)
GGCAGTCATGACACTTGGCATTACT
LOC_Os01g09246
Os.12093.1.S1_at--750--6991Chr01:4681153..4681177 (25 bp)
GTACTCAAAGCACGGCCTTTCTTTA
LOC_Os01g09246
Os.12093.1.S1_at--1119--10411Chr01:4681217..4681241 (25 bp)
TTATAGATGCAATTTCCGCGTCCCT
LOC_Os01g09246
Os.12093.1.S1_at--513--4651Chr01:4681234..4681258 (25 bp)
GCGTCCCTCTGCTAATCATATGTGC
LOC_Os01g09246
Os.12093.1.S1_at--375--5031Chr01:4681257..4681281 (25 bp)
GCAGTCACAACCAACCTGTATTTTG
LOC_Os01g09246
Os.12093.1.S1_at--344--2891Chr01:4681299..4681323 (25 bp)
AAGGTGTACTTGATCCATTATTTGT
LOC_Os01g09246
Os.12093.1.S1_at--637--4851Chr01:4681394..4681418 (25 bp)
GCTACTGCTCTTGTTGTCGGTGCTA
LOC_Os01g09246
Os.12093.1.S1_at--389--7771Chr01:4681412..4681436 (25 bp)
GGTGCTATGTACTTTGCCTCTAGAT
LOC_Os01g09246
Os.12093.1.S1_at--80--7331Chr01:4681498..4681522 (25 bp)
GTGCTAACTTGGCTGATGGTTTTCA
LOC_Os01g09246
Os.12093.1.S1_at--613--6251Chr01:4681512..4681536 (25 bp)
GATGGTTTTCATCCCTCATCATTAA
LOC_Os01g09246
Os.12093.1.S1_at--386--3011Chr01:4681540..4681564 (25 bp)
AATGCAATGCTGATACCACCGAGTT
LOC_Os01g09246
Target Sequence 
GGCAGTCATGACACTTGGCATTACTACTACTAAAGGTTCTTTTGGGAGCTTTTTNACAACTCAATTTTTTGGGAGTTGAT
AAAAGGAAGGGTGGGGGTACTCAAAGCACGGCCTTTCTTTATTGNCCTTTGGCCGAAGAAGAAGCAACTACTACAGTGGG
TTATAGATGCAATTTCCGCGTCCCTCTGCTAATCATATGTGCAGTCACAACCAACCTGTATTTTGGTGTTGTATATATAA
AAAAGGTGTACTTGATCCATTATTTGTAGGATTTAGACACCATAGAGTTTATAAACAGTTCCCAAGCTAACTGAAGAGAT
GTGATTTTGTTGTTGTTGCTACTGCTCTTGTTGTCGGTGCTATGTACTTTGCCTCTAGATGTTGAGCTGGGCAAGGCAGG
CATTGACTGTGAAACTTGTNCTACCTGNTTGGATAACACAAGTGCTAACTTGGCTGATGGTTTTCATCCCTCATCATTAA
CCCAATGCAATGCTGATACCACCGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis