Browse Element(s) Details


Os.3808.2.S1_x_at

Description gb:AK120573.1
DB_XREF= gi:37990196
TID=Os.3808.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134I11, full insert sequence.
FL= gb:AK120573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g092202/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09200Os.19128.1.S1_at11/111+4618480..4628164Protein kinase domain containing protein, expressed
LOC_Os01g09206NANA1+4639103..4639912retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09212NANA1+4640863..4641498retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09220Os.3808.4.S1_x_at11/111+4643236..4645055transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g09220Os.3808.2.S1_x_at2/111+4643236..4645055transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g09230Os.10811.1.S1_at11/111+4646958..4648763expressed protein
LOC_Os01g09240OsAffx.9699.1.S1_at6/111+4659641..4661103retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3808.2.S1_x_at--555--1451Chr01:4644139..4644163 (25 bp)
AGAAGACCTCCTACTCCATGACCGT
LOC_Os01g09220
Os.3808.2.S1_x_at--275--691Chr01:4644156..4644180 (25 bp)
ATGACCGTCCAGTGCGTCGTCGACT
LOC_Os01g09220
Os.3808.2.S1_x_at--662--1431NONE
AGAACCTGACGTGGTCGCAGCGCAA
NONE
Os.3808.2.S1_x_at--619--4591Chr12:404298..404322 (25 bp)
GCGCAACACCCATTTGTGAGATCAG
NONE
Os.3808.2.S1_x_at--276--8833Chr12:404434..404458 (25 bp)
TGATTGTTCTTGCTGCCATCCTCAA
NONE
Os.3808.2.S1_x_at--638--9991Chr12:404471..404495 (25 bp)
TAGCGAGTGGATCTGCCTGGAACCT
NONE
Os.3808.2.S1_x_at--11--8191Chr12:404489..404513 (25 bp)
GGAACCTTTTTGTTCTTGATGGCAT
NONE
Os.3808.2.S1_x_at--578--5191Chr12:404521..404545 (25 bp)
GCAATGCATCCAGCGAGTGGAGCTT
NONE
Os.3808.2.S1_x_at--277--6131Chr12:404535..404559 (25 bp)
GAGTGGAGCTTTGCTTGCATTCATT
NONE
Os.3808.2.S1_x_at--386--4951Chr12:404551..404575 (25 bp)
GCATTCATTTGTGCTTTGACGCCAC
NONE
Os.3808.2.S1_x_at--759--2111Chr12:404603..404627 (25 bp)
ACATGTATACTGTCTTCCTTTTCCC
NONE
Target Sequence 
AGAAGACCTCCTACTCCATGACCGTCCAGTGCGTCGTCGACTCCACCGGCGCCTTCACCGACGTCTGCATCGGCTGGCCG
GGGTCCAACTCCGACGAGGAGGTGCTCGAGAAGTCGGCGCTGTACCTGCACCGCGGCGTTCCCGGCCTGATCCAGGGCCA
GTGGGTGGTCGGCGGCGGGAGCTTCCCGCTCATGGACTGGATGCTCGTGCCCTACACCCACCAGAACCTGACGTGGTCGC
AGCGCAACACCCATTTGTGAGATCAGAGCTTGAGGTTGACGGCGAGGTGGTTGATCCCGGCTGAGGAAATTGGGCGGTCC
GGACGGATGTGTAGAGGTAATTCTCCAAAGTAAACCTCCCCTCAAGTCCCAGCCACCTGATTGTTCTTGCTGCCATCCTC
AAGAGCAATGGATCTAGCGAGTGGATCTGCCTGGAACCTTTTTGTTCTTGATGGCATTCTGAGAGCAATGCATCCAGCGA
GTGGAGCTTTGCTTGCATTCATTTGTGCTTTGACGCCACTCTGCTGGTATTTAGTGAAAAAAAAAGACATGTATACTGTC
TTCCTTTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3808.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis