Browse Element(s) Details


OsAffx.15028.1.S1_at

Description tigr:9633.m03681
TID=OsAffx.15028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ZIP zinciron transport family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3954011/11ZIP zinc/iron transport family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39510OsAffx.27238.1.S1_at7/115+23101807..23103229hypothetical protein
LOC_Os05g39510OsAffx.9699.1.S1_at2/115+23101807..23103229hypothetical protein
LOC_Os05g39520Os.34987.1.A1_a_at11/115+23107448..23111951dehydration-responsive protein, putative, expressed
LOC_Os05g39530Os.27722.1.S1_at10/115+23112962..23118253ribonuclease P family protein, putative, expressed
LOC_Os05g39540OsAffx.15028.1.S1_at11/115+23121364..23123070ZIP zinc/iron transport family protein, expressed
LOC_Os05g39550OsAffx.27239.1.S1_at10/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39550OsAffx.27239.2.S1_at7/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39550OsAffx.22046.3.S1_x_at1/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39560Os.28026.1.S1_at11/115+23133272..23135983Zinc transporter 1 precursor, putative, expressed
LOC_Os05g39570Os.47463.1.S1_x_at6/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39570Os.14491.2.S1_x_at4/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0008324molecular_functioncation transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15028.1.S1_at--526--4471Chr05:23121722..23121746 (25 bp)
GCCGTGGCGGAAGTACCCGTTCACG
LOC_Os05g39540
OsAffx.15028.1.S1_at--1126--1791Chr05:23122006..23122185 (25 bp)
ACCGCGTCATCTCACAGGTGTTTGA
LOC_Os05g39540
OsAffx.15028.1.S1_at--488--5891Chr05:23122620..23122644 (25 bp)
GAGCTGGGTATCATAGTGCATTCGA
LOC_Os05g39540
OsAffx.15028.1.S1_at--1025--10151Chr05:23122646..23122670 (25 bp)
TATCATCGGGATATCACTAGGTGCA
LOC_Os05g39540
OsAffx.15028.1.S1_at--1128--9671Chr05:23122659..23122683 (25 bp)
TCACTAGGTGCATCCGAGAGCCCAA
LOC_Os05g39540
OsAffx.15028.1.S1_at--29--6011Chr05:23122674..23122698 (25 bp)
GAGAGCCCAAGCACGATCAGACCGC
LOC_Os05g39540
OsAffx.15028.1.S1_at--5--9431Chr05:23122699..23122723 (25 bp)
TCGTGGCCGCGTTAACATTTCATCA
LOC_Os05g39540
OsAffx.15028.1.S1_at--274--391Chr05:23122720..23122744 (25 bp)
ATCAGTTCTTCGAAGGGATAGGGCT
LOC_Os05g39540
OsAffx.15028.1.S1_at--1060--8011Chr05:23122746..23122999 (25 bp)
GGAGGATGCATTGTTCAGTCTTTAT
LOC_Os05g39540
OsAffx.15028.1.S1_at--489--3451Chr05:23122990..23123014 (25 bp)
CAGTCTTTATGTGCTTCATGTGGGA
LOC_Os05g39540
OsAffx.15028.1.S1_at--295--7491Chr05:23123009..23123033 (25 bp)
GTGGGAGTGTGGGACTACTCACAAA
LOC_Os05g39540
Target Sequence 
GCCGTGGCGGAAGTACCCGTTCACGGGGCTCGTCGCCATGCTCGCCGCCGTGGCCACGCTCCTCCTCGACACGATCGCCA
CGGGCTACTTCCTGCAGCGCGCGCAGGACAGCCGCGGCGCCGTCGCCGCCGTCGCCGCGTGCGGCGGGGACGCGTCGTCG
TCGCACGACCACGAGCGCGGGAACGCGCACGGCGTGTCGTCGGCCGTGATCGCGTCGGCGACGATGCCGAACGACGCCGC
CGACGACTGCGACGACGCCGAGGACCGCGCGAAGCTCGTCCGCCACCGCGTCATCTCACAGGTGTTTGAGCTGGGTATCA
TAGTGCATTCGATTATCATCGGGATATCACTAGGTGCATCCGAGAGCCCAAGCACGATCAGACCGCTCGTGGCCGCGTTA
ACATTTCATCAGTTCTTCGAAGGGATAGGGCTGGGAGGATGCATTGTTCAGTCTTTATGTGCTTCATGTGGGAGTGTGGG
ACTACTCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis