Browse Element(s) Details


OsAffx.6967.1.S1_at

Description tigr:9639.m00147
TID=OsAffx.6967.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0241011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02379Os.10615.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10255.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.1.S1_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.38269.1.S1_x_at10/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.2.S1_x_at9/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10615.1.S1_x_at3/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.51910.1.S1_x_at1/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02400Os.26565.1.S1_a_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02400Os.36779.1.S1_s_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02410OsAffx.6967.1.S1_at11/1111+719750..720923hypothetical protein
LOC_Os11g02410OsAffx.31617.1.S1_x_at1/1111+719750..720923hypothetical protein
LOC_Os11g02424Os.10120.1.S2_a_at11/1111+721936..725972expressed protein
LOC_Os11g02424Os.10120.2.S1_at11/1111+721936..725972expressed protein
LOC_Os11g02440Os.37295.1.S1_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02440Os.6354.1.S1_s_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02450Os.37247.1.S1_at10/1111+733254..736189Elongation factor P, putative, expressed
LOC_Os11g02460OsAffx.6968.1.S1_x_at11/1111+738298..741793chloroplastic outer envelope membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6967.1.S1_at--999--8171Chr11:720807..720831 (25 bp)
GGAACCGCCTCTGGCATCAGATCTA
LOC_Os11g02410
OsAffx.6967.1.S1_at--1020--3771Chr11:720799..720823 (25 bp)
CTCTGGCATCAGATCTACCTGCTCG
LOC_Os11g02410
OsAffx.6967.1.S1_at--755--4211Chr11:720630..720654 (25 bp)
CCGCCGTGTCGATGGAATCGATCCA
LOC_Os11g02410
OsAffx.6967.1.S1_at--241--8571Chr11:720053..720076 (24 bp)
TGGTACGGCCGGTTCCCTCATGGCG
LOC_Os11g02410
OsAffx.6967.1.S1_at--912--9971Chr11:720025..720049 (25 bp)
TACCTCTACCGCCAGCAGAAATGGA
LOC_Os11g02410
OsAffx.6967.1.S1_at--521--831Chr11:720005..720029 (25 bp)
ATGGATTCATCATCTGGTGTCTGCT
LOC_Os11g02410
OsAffx.6967.1.S1_at--448--7753Chr12:758281..758305 (25 bp)
GGTGTCTGCTCATGCGACGACTCAT
NONE
OsAffx.6967.1.S1_at--862--5011Chr11:719963..719987 (25 bp)
GCAGTCAACACGATATGTAGGAGAA
LOC_Os11g02410
OsAffx.6967.1.S1_at--479--4991Chr11:719832..719852 (21 bp)
GCATGATTATTTTACCGGCGTCGAT
LOC_Os11g02410
OsAffx.6967.1.S1_at--97--8591Chr11:719804..719828 (25 bp)
TGGTTATCCATCCTGTTACAGCCAA
LOC_Os11g02410
OsAffx.6967.1.S1_at--468--4391Chr11:719784..719808 (25 bp)
GCCAATCAAAAATCTGCCAACAGGT
LOC_Os11g02410
Target Sequence 
GGAACCGCCTCTGGCATCAGATCTACCTGCTCGCAGCCCTCCCCCGCCGTATCCAAGCGCCCGCATCTTGGTAGACGAGG
AACTCCGTAGGGAGATGCAGAAGCGAGGGAGAGCGGCGTGGAGTGGGGAGGGATGTGCGGGGAGGAGCGGGACAGAGGTA
GGGAGGGAATCTGGACGCCGCCGTGTCGATGGAATCGATCCAGGAGAGGGCGGCGGGGAGAAAGCGAGAGAGAGAGAGAG
AGAGAGAGACGAGAGAAATCTGGGAGGTGGTACGGCCGGTTCCCTCATGGCGGCGTACCTCTACCGCCAGCAGAAATGGA
TTCATCATCTGGTGTCTGCTCATGCGACGACTCATCTGCAGTCAACACGATATGTAGGAGAATGCATGATTATTTTACCG
GCGTCGATGGATGGTTATCCATCCTGTTACAGCCAATCAAAAATCTGCCAACAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis