Browse Element(s) Details


OsAffx.6968.1.S1_x_at

Description tigr:9639.m00152
TID=OsAffx.6968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=outer membrane protein, OMP85 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0246011/11chloroplastic outer envelope membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02400Os.26565.1.S1_a_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02400Os.36779.1.S1_s_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02410OsAffx.6967.1.S1_at11/1111+719750..720923hypothetical protein
LOC_Os11g02410OsAffx.31617.1.S1_x_at1/1111+719750..720923hypothetical protein
LOC_Os11g02424Os.10120.1.S2_a_at11/1111+721936..725972expressed protein
LOC_Os11g02424Os.10120.2.S1_at11/1111+721936..725972expressed protein
LOC_Os11g02440Os.37295.1.S1_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02440Os.6354.1.S1_s_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02450Os.37247.1.S1_at10/1111+733254..736189Elongation factor P, putative, expressed
LOC_Os11g02460OsAffx.6968.1.S1_x_at11/1111+738298..741793chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os11g02470OsAffx.18638.1.S1_at11/1111+749014..750211WRKY DNA binding domain containing protein
LOC_Os11g02480Os.33990.1.S1_at11/1111+758588..762335WRKY DNA binding domain containing protein, expressed
LOC_Os11g02480OsAffx.16011.1.S1_at2/1111+758588..762335WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009707cellular_componentchloroplast outer membrane
GO:0009941cellular_componentchloroplast envelope
GO:0010006cellular_componentToc complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6968.1.S1_x_at--92--5832Chr12:780098..780122 (25 bp)
GACCGAATGGCGTTTCTACAAGCTA
NONE
OsAffx.6968.1.S1_x_at--73--9571Chr11:738917..738941 (25 bp)
TCTTCAACCGTCATCAGCTTACAGT
LOC_Os11g02460
OsAffx.6968.1.S1_x_at--824--9632Chr12:779558..779582 (25 bp)
TCATGGCCGTTATGCTGGGTGTGTA
NONE
OsAffx.6968.1.S1_x_at--843--4952Chr12:779512..779536 (25 bp)
GCATTTGCACTTGGAGGACCTCATT
NONE
OsAffx.6968.1.S1_x_at--703--10832Chr12:779461..779485 (25 bp)
TTGGGTGCTTCCAGAAATCTTCTTG
NONE
OsAffx.6968.1.S1_x_at--317--3072Chr12:779286..779470 (25 bp)
AATCTTCTTGAGGTTGCCACTGAGC
NONE
OsAffx.6968.1.S1_x_at--1103--8911Chr11:738520..738544 (25 bp)
TGAGCGTGCCTATCACCGTGAAGAA
LOC_Os11g02460
OsAffx.6968.1.S1_x_at--171--852Chr12:779204..779228 (25 bp)
ATGGCACTGATCTTGGGAGCTCCAA
NONE
OsAffx.6968.1.S1_x_at--746--10372Chr12:779153..779177 (25 bp)
TTTTCAGACGTGTTGGCCATGGCTC
NONE
OsAffx.6968.1.S1_x_at--257--571Chr11:738387..738411 (25 bp)
ATCCTATGGCGTCGGTGTCAAGCTT
LOC_Os11g02460
OsAffx.6968.1.S1_x_at--168--9132Chr12:779083..779107 (25 bp)
TGCTGTTGATCACAATGCTGGCACA
NONE
Target Sequence 
GACCGAATGGCGTTTCTACAAGCTAATATAACTCGAGACAATACAGAGTTCGTCAATGGTGCAACAATCGGTGACAGATG
TATATTCCAGATGGACCAAGGTCTCGGCATTGGAAGCAAGAACCCGTTCTTCAACCGTCATCAGCTTACAGTGACGAAAT
TCATAAATTTGAACAAGCAAGAGAAAGGCTCTCGCAAGCCACCACCAGCTGTTTTGGCTCTTCATGGCCGTTATGCTGGG
TGTGTAGGAGATTTGCCAAGCTATGATGCATTTGCACTTGGAGGACCTCATTCAGTAAGGGGCTACGGTATGGGTGAATT
GGGTGCTTCCAGAAATCTTCTTGAGGTTGCCACTGAGCTGAGCGTGCCTATCACCGTGAAGAACAGACACACGCAGGTGT
ATGCATTTGCTGAGCATGGCACTGATCTTGGGAGCTCCAAGGATGTGGAAGGGAACCCTACTGAGTTTTTCAGACGTGTT
GGCCATGGCTCATCCTATGGCGTCGGTGTCAAGCTTGGTGCGGTAAGGGCAGAGTATGCTGTTGATCACAATGCTGGCAC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6968.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis