Browse Element(s) Details


Os.33990.1.S1_at

Description gb:AK073243.1
DB_XREF= gi:32983266
TID=Os.33990.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033005D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033005D11, full insert sequence.
FL= gb:AK073243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0248011/11WRKY DNA binding domain containing protein, expressed
LOC_Os12g0242010/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02450Os.37247.1.S1_at10/1111+733254..736189Elongation factor P, putative, expressed
LOC_Os11g02460OsAffx.6968.1.S1_x_at11/1111+738298..741793chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os11g02470OsAffx.18638.1.S1_at11/1111+749014..750211WRKY DNA binding domain containing protein
LOC_Os11g02480Os.33990.1.S1_at11/1111+758588..762335WRKY DNA binding domain containing protein, expressed
LOC_Os11g02480OsAffx.16011.1.S1_at2/1111+758588..762335WRKY DNA binding domain containing protein, expressed
LOC_Os11g02490Os.43567.1.S1_x_at4/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.29987.1.S1_at3/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.53217.1.S1_x_at2/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.38172.1.S1_x_at2/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02500OsAffx.6969.1.S1_at11/1111+776056..776570hypothetical protein
LOC_Os11g02510OsAffx.30782.1.S1_s_at11/1111+777413..777763hypothetical protein
LOC_Os11g02520Os.14882.1.S1_at8/1111+781359..782512WRKY DNA binding domain containing protein, expressed
LOC_Os11g02530OsAffx.30783.1.S1_at11/1111+786624..787865WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33990.1.S1_at--885--5152Chr12:801971..801995 (25 bp)
GCAACCTGACATGAACACCTACAGT
LOC_Os12g02420
Os.33990.1.S1_at--951--332Chr12:801961..801985 (25 bp)
ATGAACACCTACAGTCGCCAGTTTC
LOC_Os12g02420
Os.33990.1.S1_at--822--7772Chr12:801844..801868 (25 bp)
GGTGCTCTGTCGAGGACATTGCTGC
LOC_Os12g02420
Os.33990.1.S1_at--1101--6172Chr12:801833..801857 (25 bp)
GAGGACATTGCTGCCGATCGGTCAG
LOC_Os12g02420
Os.33990.1.S1_at--1021--9052Chr12:801802..801826 (25 bp)
TGCATCGAGTATTTCCATTTCTTGT
LOC_Os12g02420
Os.33990.1.S1_at--457--4072Chr12:801797..801821 (25 bp)
CGAGTATTTCCATTTCTTGTGATGA
LOC_Os12g02420
Os.33990.1.S1_at--651--7352Chr12:801760..801784 (25 bp)
GTGAAGGAGATGCATATACATTCTG
LOC_Os12g02420
Os.33990.1.S1_at--960--4952Chr12:801749..801773 (25 bp)
GCATATACATTCTGAGGAGCCTCTT
LOC_Os12g02420
Os.33990.1.S1_at--1123--2072Chr12:801743..801767 (25 bp)
ACATTCTGAGGAGCCTCTTGGATGG
LOC_Os12g02420
Os.33990.1.S1_at--527--6051Chr11:758769..758793 (25 bp)
GAGATTCCATATACTATAGTGGCAT
LOC_Os11g02480
Os.33990.1.S1_at--819--9892Chr12:801664..801683 (20 bp)
TACTATAGTGGCATTATGTTGTTTT
LOC_Os12g02420
Target Sequence 
GCAACCTGACATGAACACCTACAGTCGCCAGTTTCANTGGGCAGACACATCGTCATCTACAAGCNATGCTCCGGTTAAGA
TGGAGGCGGACGATTATGCNGAAGCAAGTGCTTCNCCCAGTACNACNGGTGCTCTGTCGAGGACATTGCTGCCGATCGGT
CAGTCAANATGCATCGAGTATTTCCATTTCTTGTGATGATTTTNATGGAAAGTGAAGGAGATGCATATACATTCTGAGGA
GCCTCTTGGATGGTNCCAGATAGGGTTTTATATTGGGAGGTGNGGATGTTGTGCTNATGAGATTCCATATACTATAGTGG
CATTATGTTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis