Browse Element(s) Details


OsAffx.30783.1.S1_at

Description tigr:9640.m00150
TID=OsAffx.30783.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0245011/11WRKY DNA binding domain containing protein
LOC_Os11g0253011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02410OsAffx.31553.1.S1_at11/1112+800669..800902hypothetical protein
LOC_Os12g02420Os.33990.1.S1_at10/1112+801505..805097WRKY DNA binding domain containing protein, expressed
LOC_Os12g02430NANA12+811339..811716MybHv5, putative
LOC_Os12g02440Os.14882.1.S1_at9/1112+816004..821940WRKY DNA binding domain containing protein, expressed
LOC_Os12g02450OsAffx.30783.1.S1_at11/1112+823302..824540WRKY DNA binding domain containing protein
LOC_Os12g02460Os.34131.1.S1_s_at10/1112+828515..830650hAT family dimerisation domain containing protein
LOC_Os12g02470Os.7502.2.S1_at10/1112+833236..837755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02470OsAffx.30784.1.S1_at7/1112+833236..837755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02470OsAffx.30784.1.S1_s_at3/1112+833236..837755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02490Os.52895.1.S1_x_at11/1112+843208..847289expressed protein
LOC_Os12g02490Os.9085.1.S1_at9/1112+843208..847289expressed protein
LOC_Os12g02480OsAffx.19458.1.S1_at11/1112+846960..847693hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30783.1.S1_at--134--6572Chr12:823972..823996 (25 bp)
GATTCGGTGTCGCTTGAAACTCCAG
LOC_Os12g02450
OsAffx.30783.1.S1_at--275--8972Chr12:823958..823982 (25 bp)
TGAAACTCCAGTGCCACACTACGAT
LOC_Os12g02450
OsAffx.30783.1.S1_at--270--2012Chr12:823941..823965 (25 bp)
ACTACGATGGCCACCAATGGAGGAA
LOC_Os12g02450
OsAffx.30783.1.S1_at--980--312Chr12:823916..823940 (25 bp)
ATACGGGCAGAAGCACATCAACAAC
LOC_Os12g02450
OsAffx.30783.1.S1_at--198--7212Chr12:823565..823589 (25 bp)
GTCGTCGTCGAAGCATCACAGATTA
LOC_Os12g02450
OsAffx.30783.1.S1_at--102--392Chr12:823551..823575 (25 bp)
ATCACAGATTAGCACCGACAGCCAT
LOC_Os12g02450
OsAffx.30783.1.S1_at--1023--10432Chr12:823543..823567 (25 bp)
TTAGCACCGACAGCCATTGCCAGAG
LOC_Os12g02450
OsAffx.30783.1.S1_at--137--3572Chr12:823432..823456 (25 bp)
CATCAGTCGTCGTTGAGGATTGCAA
LOC_Os12g02450
OsAffx.30783.1.S1_at--1--8872Chr12:823419..823443 (25 bp)
TGAGGATTGCAATAAGCTTCTTGAC
LOC_Os12g02450
OsAffx.30783.1.S1_at--99--7152Chr12:823361..823385 (25 bp)
GTCTTGTTGTTCGACATGACTGCAT
LOC_Os12g02450
OsAffx.30783.1.S1_at--398--5732Chr12:823344..823368 (25 bp)
GACTGCATATGCACCTTTAGATTTG
LOC_Os12g02450
Target Sequence 
GATTCGGTGTCGCTTGAAACTCCAGTGCCACACTACGATGGCCACCAATGGAGGAAATACGGGCAGAAGCACATCAACAA
CTCCAAACACCCAAGGAGCTACTANAGATGCACCTACAGGCAGGAAGAGAAGTGCAAGGCNACAAAGACGGTGCAGCAGC
GAGAAGACCTGCACCANGCCAACAGCTACAATGGCGATCANCCCNTCATGTACACGGTNGTCTACTACGGCCAGCANACC
TGCTGCAAGGGCCCTGCGGCATNAGCTGATGATCATGTCGTCGTCGAAGCATCACAGATTAGCACCGACAGCCATTGCCA
GAGTCCGNNNAGCAGCAGCAGCGANCTGCAGGCTGCGGNANNNCACGCCGGTNACAGCAGCCAGTGCAGCAACATCTCCG
TCACNTGTTCANCATCAGTCGTCGTTGAGGATTGCAATAAGCTTCTTGACATGNTGCCAGCTGCTGATGAACTGACCNCT
GATGTCTTGTTGTTCGACATGACTGCATATGCACCTTTAGATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis