Browse Element(s) Details


Os.52895.1.S1_x_at

Description gb:AK069763.1
DB_XREF= gi:32979787
TID=Os.52895.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029P11, full insert sequence.
FL= gb:AK069763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0249011/11expressed protein
LOC_Os11g025506/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02440Os.14882.1.S1_at9/1112+816004..821940WRKY DNA binding domain containing protein, expressed
LOC_Os12g02450OsAffx.30783.1.S1_at11/1112+823302..824540WRKY DNA binding domain containing protein
LOC_Os12g02460Os.34131.1.S1_s_at10/1112+828515..830650hAT family dimerisation domain containing protein
LOC_Os12g02470Os.7502.2.S1_at10/1112+833236..837755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02470OsAffx.30784.1.S1_at7/1112+833236..837755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02470OsAffx.30784.1.S1_s_at3/1112+833236..837755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02490Os.52895.1.S1_x_at11/1112+843208..847289expressed protein
LOC_Os12g02490Os.9085.1.S1_at9/1112+843208..847289expressed protein
LOC_Os12g02480OsAffx.19458.1.S1_at11/1112+846960..847693hypothetical protein
LOC_Os12g02500Os.48066.1.S1_at11/1112+853005..854382hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g02510Os.53907.1.S1_at4/1112+855275..856433hypothetical protein
LOC_Os12g02520Os.25109.1.S1_at7/1112+857268..859498expressed protein
LOC_Os12g02530Os.12110.1.S1_at11/1112+860146..862519RPT2, putative, expressed
LOC_Os12g02540Os.14454.1.A1_at11/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02540Os.56849.1.S1_at1/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02540OsAffx.28871.1.S1_at1/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52895.1.S1_x_at--285--9011Chr12:845510..845534 (25 bp)
TGAATGATGGCCCTCGAACTGATCC
LOC_Os12g02490
Os.52895.1.S1_x_at--114--10453Chr12:845463..845487 (25 bp)
TTAGAGATGTCTTTCAGTGATGCTG
LOC_Os12g02490
Os.52895.1.S1_x_at--352--6352Chr12:845445..845469 (25 bp)
GATGCTGAAGAACCACTAGACCAAA
LOC_Os12g02490
Os.52895.1.S1_x_at--952--2432Chr12:845423..845447 (25 bp)
AAAATATTATGGTCTCCCTCAATGA
LOC_Os12g02490
Os.52895.1.S1_x_at--546--5632Chr12:845184..845208 (25 bp)
GACACTTTGGATGCAGGTGGTGCTA
LOC_Os12g02490
Os.52895.1.S1_x_at--1097--6251Chr12:845127..845151 (25 bp)
GATGGGCTTCTCAAATCTGGACAAA
LOC_Os12g02490
Os.52895.1.S1_x_at--528--6851Chr12:845102..845126 (25 bp)
GTTTCCAACAATGTGAGCTGGCTGC
LOC_Os12g02490
Os.52895.1.S1_x_at--1148--8911Chr12:845089..845113 (25 bp)
TGAGCTGGCTGCTGTTAACATGGCA
LOC_Os12g02490
Os.52895.1.S1_x_at--478--2131Chr12:845009..845033 (25 bp)
ACAGTGGAACTGCTGCTGTTCTTTC
LOC_Os12g02490
Os.52895.1.S1_x_at--903--4772Chr12:844998..845022 (25 bp)
GCTGCTGTTCTTTCAAATTTGTCAA
LOC_Os12g02490
Os.52895.1.S1_x_at--506--7272Chr12:844961..844985 (25 bp)
GTGCCATATTACCACCTAGCTGTGA
LOC_Os12g02490
Target Sequence 
TGAATGATGGCCCTCGAACTGATCCTCATNGCCGGTTAATCGAAGAATTAGAGATGTCTTTCAGTGATGCTGAAGAACCA
CTAGACCAAAATATTATGGTCTCCCTCAATGACATAGAAAAGCCTATTTTGGATGAGGTCAGTAAAGAAAATCACATTTT
GGAGGAGGATGGTAAAGAAAGTCACATTTTGGACGTGGATGGTAAANGAAAGTCACATTTTGGACGTGGATGGTAAACAA
AACCACATTTTGGNACGAGGATGGTAAAGAAAACCACATTTTGAATGAGGNTGNATAAGGAAANCNNCATTTTGGNATAA
GGGCGGCGAGGACACTTTGGATGCAGGTGGTGCTAATTCNTATGAAGAAAGAGTATTGCCATCAGATGATGGGCTTCTCA
AATCTGGACAAAGTTTCCAACAATGTGAGCTGGCTGCTGTTAACATGGCAGAAAAGGATGAGGGGCATCTAGAAGAAACC
AACATGGCTAACCATGCTGAAGCAAACAGTGGAACTGCTGCTGTTCTTTCAAATTTGTCAAACGATAAATTTTGTGCCAT
ATTACCACCTAGCTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52895.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis