Browse Element(s) Details


Os.14454.1.A1_at

Description gb:AK066267.1
DB_XREF= gi:32976285
TID=Os.14454.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059E13, full insert sequence.
FL= gb:AK066267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0254011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g361801/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02490Os.52895.1.S1_x_at11/1112+843208..847289expressed protein
LOC_Os12g02490Os.9085.1.S1_at9/1112+843208..847289expressed protein
LOC_Os12g02480OsAffx.19458.1.S1_at11/1112+846960..847693hypothetical protein
LOC_Os12g02500Os.48066.1.S1_at11/1112+853005..854382hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g02510Os.53907.1.S1_at4/1112+855275..856433hypothetical protein
LOC_Os12g02520Os.25109.1.S1_at7/1112+857268..859498expressed protein
LOC_Os12g02530Os.12110.1.S1_at11/1112+860146..862519RPT2, putative, expressed
LOC_Os12g02540Os.14454.1.A1_at11/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02540Os.56849.1.S1_at1/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02540OsAffx.28871.1.S1_at1/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02550Os.17196.1.A1_s_at11/1112+875293..876652expressed protein
LOC_Os12g02550Os.50540.1.S1_at2/1112+875293..876652expressed protein
LOC_Os12g02560OsAffx.31554.1.S1_at9/1112+880780..882971hypothetical protein
LOC_Os12g02560OsAffx.31656.2.S1_at3/1112+880780..882971hypothetical protein
LOC_Os12g02570Os.28346.1.S1_x_at1/1112+886161..889817expressed protein
LOC_Os12g02589OsAffx.7463.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.2.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14454.1.A1_at--479--9111Chr12:864368..864392 (25 bp)
TGCTGCCTCCTGAATCATCATCAAA
LOC_Os12g02540
Os.14454.1.A1_at--442--5251Chr12:864357..864381 (25 bp)
GAATCATCATCAAACTGCATGCTTG
LOC_Os12g02540
Os.14454.1.A1_at--802--2551Chr12:864345..864369 (25 bp)
AACTGCATGCTTGCTCTTGTTACTG
LOC_Os12g02540
Os.14454.1.A1_at--110--7053Chr07:21620310..21620709 (25 bp)
GTAAAATTCTACAGCTAGGTGAAGA
LOC_Os07g36180
Os.14454.1.A1_at--998--2791Chr12:864250..864274 (25 bp)
AAGTGTTAACACTCCTTTATTAGAT
LOC_Os12g02540
Os.14454.1.A1_at--384--3591Chr12:864193..864217 (25 bp)
CATTTTCATTTTGGGTGTGGCTTTT
LOC_Os12g02540
Os.14454.1.A1_at--1104--7531Chr12:864177..864201 (25 bp)
GTGGCTTTTTCTTGGTCATTGCGGC
LOC_Os12g02540
Os.14454.1.A1_at--937--71Chr12:864160..864184 (25 bp)
ATTGCGGCCTCCTGCGCTAATGGAA
LOC_Os12g02540
Os.14454.1.A1_at--1056--5491Chr12:864116..864140 (25 bp)
GAACACTACAAATCCAAATCATGAA
LOC_Os12g02540
Os.14454.1.A1_at--433--5231Chr12:864094..864118 (25 bp)
GAATATTTTGCAGAGCACCTCTTTA
LOC_Os12g02540
Os.14454.1.A1_at--791--7515Chr07:24242004..24242028 (25 bp)
GTGGCAAGCCACTGTGGTGGACCCT
NONE
Target Sequence 
TGCTGCCTCCTGAATCATCATCAAACTGCATGCTTGCTCTTGTTACTGCATGAATGCATTTTACAAGGAAAAGATGGGCA
GGGAAAATGTAAAATTCTACAGCTAGGTGAAGAGATTAAAGTGTTAACACTCCTTTATTAGATAAGCTAATCTAGTTCTA
TTGTACAAGTAGTAACATTTTCATTTTGGGTGTGGCTTTTTCTTGGTCATTGCGGCCTCCTGCGCTAATGGAAGGAGGCA
AATTTTGCAAAAGAACACTACAAATCCAAATCATGAATATTTTGCAGAGCACCTCTTTAGATTAATTTTTTAAATTAAAA
TTTTAAACTTAATCAGAGAAGTAGATTTGAAACCGATTTAAAGACATTATACATTATTGTCGTTCAAATTTAAGATTGAT
TTGGTTGGGGNGCGCCAGGCCCGGGCTGTANTGCAACGCCTGGGCGACACNCNAGGGCCCCAGTGGCAAGCCACTGTGGT
GGACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14454.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis